Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR035079

Description

IPR035079 is a Floricaula/Leafy protein, SAM domain.

<p>FLO and LFY proteins are floral meristem identity proteins [[cite:PUB00000873], [cite:PUB00001038]]. Mutations in the sequences of these proteins affect flower and leaf development. LFY has been shown to bind semi-palindromic 19-bp DNA elements through its highly conserved C-terminal DNA-binding domain (DBD). In addition to its well-characterized DBD, LFY possesses a second conserved domain at its amino terminus (LFY-N). Crystallographic structure determination shows that LFY-N is a sterile alpha motif (SAM) domain that mediates LFY oligomerization. It allows LFY to bind to regions lacking high-affinity LFY-binding sites and to access closed chromatin regions. Experiments revealed that altering the capacity of LFY to oligomerize compromised floral function. It has been suggested that the biochemical properties of the SAM domain are evolutionary conserved in all plant species [[cite:PUB00085053]].</p> <p>This entry represents a SAM domain found in various plant proteins which are homologues of floricaula (FLO) and Leafy (LFY).</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
LEAFY; TAIR: AT5G61850.1 floral meristem identity control protein LEAFY (LFY); Swiss-Prot: sp|O48559|UNI_PEA Protein UNIFOLIATA; TrEMBL-Plants: tr|Q533T0|Q533T0_LOTJA Transcription factor LFY; Found in the gene: LotjaGi1g1v0332600 9
LEAFY; TAIR: AT5G61850.1 floral meristem identity control protein LEAFY (LFY); Swiss-Prot: sp|O48559|UNI_PEA Protein UNIFOLIATA; TrEMBL-Plants: tr|Q533T0|Q533T0_LOTJA Transcription factor LFY; Found in the gene: LotjaGi1g1v0332600 9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 50.00