Transcript — View — Lotus Base

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LotjaGi1g1v0332600.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0332600
Transcript ID	LotjaGi1g1v0332600.2
Related isoforms 1	LotjaGi1g1v0332600.1
Lotus japonicus genome version	Gifu v1.2
Description	LEAFY; TAIR: AT5G61850.1 floral meristem identity control protein LEAFY (LFY); Swiss-Prot: sp\|O48559\|UNI_PEA Protein UNIFOLIATA; TrEMBL-Plants: tr\|Q533T0\|Q533T0_LOTJA Transcription factor LFY; Found in the gene: LotjaGi1g1v0332600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:78998081..79000194) extracted from Lotus japonicus Gifu genome v1.2.

TCAACACTTTCTCACTTTCCAAAAACCCGCTTTGCACTTTGCAAACACACTCACACACAAACAACCATGGATCCAGACGC ATTCACCGCCAGCCTATTCAAGTGGGACCCGCGCACCGTCCTCCCCACCACCGGACCCTTACGCCCCCCACTCCTCGACT ACGCGGTGGCTCCACCACCAGCTCCGGCAGCAGTCTACCACCCGGCGCGAGCACCTAGGGAGATTGGAGGCCTGGAGGAG CTCTTCCAAGCCTACGGAATCAGATACTACACGGCGGCGAAGATAGCGGAGCTCGGTTTTACGGTGAGCACGCTTGTGGA CATGAAGGACGACGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAACGCT ACGGCATCAAAGCCGCCGTCCGAGCTGAGCGGAGGCGCCTCGACGAGGAGGATATGAAACGCCGCAACCTCCTCTCCACC GACACCACAACCAACGCTCTCGATGCTCTCTCTCAAGAAGGTGCGCACAACACAATAGACACAAGTTTGACTAATTTGTA TATACAGTTATTTACTACTGTTATATCAAACTACTGTTCTTACTATGAATAATTTTTTTTCTTATGATATTAATTTGATG TGATTATTGACTGTGGAGAGAAGGTGTGAATAAATTTGTAGGTTTATCGGAGGAGCCGGTGGTGCAACGGGAGAAGGAGG TGGTGGGGAGTGGAGGAGGGAGCACGTGGGAGGTGGCTGTGGTGGCGGAGGAGAGGAGGAAGAAGCAGAGGCGGAGGTCG AGGATGAAGCAGCACGGTGATGACAACGAGGAAGGGGAAGACGAGGAAGGAGAGGATGATGATGAAGGGAACAACAACAG CGGTGGTGGAGGAGGTTGTGAGAGGCAGAGAGAGCACCCGTTTATCGTGACGGAGCCTGGGGAGGTAGCACGTGGCAAGA AGAACGGTCTTGACTACCTGTTTCACCTCTATGAACAGTGTCGTGAGTTTTTGATTCAGGTTCAGGCTATTGCTAAGGAC CGTGGTGAAAAATGCCCAACCAAGGTAACTAACATGCTTTGCACATTTCTTTCCTTTTCTGTTTTGGTTTGTTTTGCTTC TCTTTTCCGTTTCAACGTGTTTGTTAACCGTGACACGTTTCACGCAACACGTGACAAGTCAGGGACTCTCTTGATGGGGT CCCATTTTTGTGTCCCCATGATGAGGTGAACGAAATATCCGGTCACAAGAGTGAACCCTACCTATAACTAACTCCAAGAG CATAGACCAGCACAATCACCCACAAGTCAAAATCATGCATGTACCTCATGACTCTTACATCCACCGGGTCCTTGCATGTT CTCATAATAATCTCAAGTCTCAACTCCACCAGACATTTTCTTCTATCTATAATTCATTAAATATTAAGAATCGACACATT TTCTTTCATCTATAAGTATAACTCATTTAATATTACATCTATTACCTCCCAGGGTTGCATGCATATTTTCATAACATATT CTTTAATATATATAACTGATTTAATATTACATCTAATATTTGTCTCATATTTTCACCAATTATAATCTTCAACAATTGGT AACCATTTTTTGTTGAATAGGTGACAAATCAGGTGTTTAGGTATGCGAAGAAGGCTGGGGCGAGCTATATTAACAAGCCA AAGATGAGGCACTACGTGCACTGCTACGCGTTGCACTGTCTGGATGAGGAGGTGTCGAATGAACTGAGGAGGGGTTTCAA GGAGAGAGGGGAGAACGTAGGCGCGTGGAGGCAAGCGTGTTACAAGCCGCTGGTGGCGATTGCGGCGCGTCAGGGTTGGG ACATTGATGCAATTTTCAACGCGCATCCTCGTCTTTCGATATGGTACGTGCCAACCAAGCTCCGCCAGCTGTGTCACGCT GAGAGGAACAGCGCCGCCGCTTCTAGCTCCGTTTCTGTTGGCAGTGCTCACCTTCCTTTCTAAATTAAATTGTGTTTTAG TGATCTAGTAATAGATGTAGGAGTATCAGTGTAGGTAGGAAGTTGAGTACTCATCTACGGGGTATTATCAAATTAATTAA CGAAGGGCATGTAGTGATCGACGGGACTTGTTTT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCCAGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCGCGCACCGTCCTCCCCACCACCGGACCCTTACGCCC CCCACTCCTCGACTACGCGGTGGCTCCACCACCAGCTCCGGCAGCAGTCTACCACCCGGCGCGAGCACCTAGGGAGATTG GAGGCCTGGAGGAGCTCTTCCAAGCCTACGGAATCAGATACTACACGGCGGCGAAGATAGCGGAGCTCGGTTTTACGGTG AGCACGCTTGTGGACATGAAGGACGACGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCT CGTCGGCGAACGCTACGGCATCAAAGCCGCCGTCCGAGCTGAGCGGAGGCGCCTCGACGAGGAGGATATGAAACGCCGCA ACCTCCTCTCCACCGACACCACAACCAACGCTCTCGATGCTCTCTCTCAAGAAGGTTTATCGGAGGAGCCGGTGGTGCAA CGGGAGAAGGAGGTGGTGGGGAGTGGAGGAGGGAGCACGTGGGAGGTGGCTGTGGTGGCGGAGGAGAGGAGGAAGAAGCA GAGGCGGAGGTCGAGGATGAAGCAGCACGGTGATGACAACGAGGAAGGGGAAGACGAGGAAGGAGAGGATGATGATGAAG GGAACAACAACAGCGGTGGTGGAGGAGGTTGTGAGAGGCAGAGAGAGCACCCGTTTATCGTGACGGAGCCTGGGGAGGTA GCACGTGGCAAGAAGAACGGTCTTGACTACCTGTTTCACCTCTATGAACAGTGTCGTGAGTTTTTGATTCAGGTTCAGGC TATTGCTAAGGACCGTGGTGAAAAATGCCCAACCAAGGTGACAAATCAGGTGTTTAGGTATGCGAAGAAGGCTGGGGCGA GCTATATTAACAAGCCAAAGATGAGGCACTACGTGCACTGCTACGCGTTGCACTGTCTGGATGAGGAGGTGTCGAATGAA CTGAGGAGGGGTTTCAAGGAGAGAGGGGAGAACGTAGGCGCGTGGAGGCAAGCGTGTTACAAGCCGCTGGTGGCGATTGC GGCGCGTCAGGGTTGGGACATTGATGCAATTTTCAACGCGCATCCTCGTCTTTCGATATGGTACGTGCCAACCAAGCTCC GCCAGCTGTGTCACGCTGAGAGGAACAGCGCCGCCGCTTCTAGCTCCGTTTCTGTTGGCAGTGCTCACCTTCCTTTCTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDPDAFTASLFKWDPRTVLPTTGPLRPPLLDYAVAPPPAPAAVYHPARAPREIGGLEELFQAYGIRYYTAAKIAELGFTV STLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDEEDMKRRNLLSTDTTTNALDALSQEGLSEEPVVQ REKEVVGSGGGSTWEVAVVAEERRKKQRRRSRMKQHGDDNEEGEDEEGEDDDEGNNNSGGGGGCERQREHPFIVTEPGEV ARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNE LRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGSAHLPF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR36079 View details on PTHR36079 Search for proteins/transripts with this domain View external data on PTHR36079	1	398	398	4.3E-201	IPR002910 Show description in modal box View details on IPR002910 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01698 View details on PF01698 Search for proteins/transripts with this domain View external data on PF01698	52	129	78	4.6E-44	IPR035079 Show description in modal box View details on IPR035079 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	136	170	35	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	185	228	44	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	200	214	15	-	–
Pfam	PF17538 View details on PF17538 Search for proteins/transripts with this domain View external data on PF17538	219	385	167	3.9E-105	IPR035209 Show description in modal box View details on IPR035209 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.4180.10 View details on G3DSA:1.10.4180.10 Search for proteins/transripts with this domain View external data on G3DSA:1.10.4180.10	222	390	169	1.4E-102	IPR038276 Show description in modal box View details on IPR038276 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0332600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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