Domain Predictions — View

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PF05817

Source: Pfam

Description

Oligosaccharyltransferase subunit Ribophorin II

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006487 View details of GO:0006487 AmiGO InterPro QuickGO	Biological process	Protein N-linked glycosylation	A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.	Subterm of GO:0006486
GO:0008250 View details of GO:0008250 AmiGO InterPro QuickGO	Cellular component	Oligosaccharyltransferase complex	A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected.	Subterm of GO:0044432 GO:0098796 GO:1990234 Part of GO:0005789
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v1096020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Glycine max] gi\|356505035\|ref\|XP_003521298.1\|	Domains CYTOPLASMIC_DOMAIN IPR008814 NON_CYTOPLASMIC_DOMAIN PF05817 PTHR12640 PTHR12640:SF0 TMhelix TRANSMEMBRANE	8
Lj5g3v1096020.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Glycine max] gi\|356537059\|ref\|XP_003537048.1\|	Domains CYTOPLASMIC_DOMAIN IPR008814 NON_CYTOPLASMIC_DOMAIN PF05817 PTHR12640 PTHR12640:SF0 TMhelix TRANSMEMBRANE	8
LotjaGi5g1v0157700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; TAIR: AT4G21150.1 ribophorin II (RPN2) family protein; Swiss-Prot: sp\|Q93Z16\|RPN2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; TrEMBL-Plants: tr\|V7BJX8\|V7BJX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0157700	Domains CYTOPLASMIC_DOMAIN IPR008814 NON_CYTOPLASMIC_DOMAIN PF05817 PTHR12640 PTHR12640:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM SignalP-noTM TMhelix TRANSMEMBRANE	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	33.33