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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0254200 |
| Transcript ID | LotjaGi6g1v0254200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein fcf2; TAIR: AT5G30495.1 Fcf2 pre-rRNA processing protein; Swiss-Prot: sp|O42877|FCF2_SCHPO rRNA-processing protein fcf2; TrEMBL-Plants: tr|I3S6D9|I3S6D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0254200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56617490..56620337) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACGTGAAGAAATTTTCTGCTTATGAAAATTGAGAGATGGGTCAATTTTCCTAATTTGACCCAGTCTCCTTCCCATC CACCTCCGGCCACCGCGTCTCTGCTCCGTCCGGCTCTCAGGTAATGTTTCTGCGTCCTCTGACCTCTGTTCCTCAGTTTC CCTTTCTCTCATCTTCCAAAGGCTTGTTTCTTCTCTTACTGTTGATTCTTACAAGTTACAACCTTCTGTTCCTTCTCCTT TTTCCTCTGTTACTGTTTGCTTAAATCTCTGTTTTCTTTCCCCTTTTTAGTGCAAGTGGCATTGGCACTCAACTTGACTA CACTACATTGGGATTGGATGATTAGTTATTTAGATTAAATTCTACTCTTTAGACTTGAATTTTTCATCATGTTTTGGTAA TTGGTATGTAATATGCTCAATTAGAGTATGAGACTTAATATCTATCTAGTATCTATTATCTATTGAACCTTTGTTATGAT ATTTGCTATTATATCTATGATATTGAGTCTATATTTGATGATATAAGTTGTTATTAGTTAGCAGAATTTTTATTAGTTGT ATTGTATAATTGCATTACGCAGGTTTTTAAATATGTGTTTGTATAATTGCATAATTAAGGCCGCCATGGCATCCACCATA TATGGTGGTATTTTGGCTTTCCGCCATGGAGTGCCGTTATTGATAACACTGTACCTAAGTTTGTTTTTTAGTTCTTTGGT TAGCATAGTGAGTTTAGCTTGTTCTTTTGTTACTCATTTGATTTGTGTAGCTTATTCTCTTGTTCAATTATGTTTTTTGG CATATTGTTTAAATTAATCCAATGTTTTAAACTATATCTCTGTTCATGAGAATTAAATTGATTTTCGTAGCATAGAAATT GTCATTCTCATATGTATAATTATATACAATTTTTGGAATCTGATTATGCAATCCACTTTGATTCAGGAATATGCCAGAAA AGAAGCCAGTGGTTGGGTTGACATGGCAACCGCAGTTGCCAGTTTCATCTTCATTAAAAGCCACAGATGGATCCCATATA AAAACTCAAATCGGGGCATCAAGAAGCACTGTTTGGAAACCCACTTCAGAGCTGGCTGATGGCCTTTTTGCTCCTCCAAA TGATCCTAGAAAATTGAACAAGTTACTGAGAAAACAAGTTAAAGATACTGCTGGGAAAAATTGGTATGCATTAGATTGTT CTCTCAATCCTCATTTTCTGAACACAAGCAGGGTTTGGATTTCGTTGGTTGTTTATCTATTAATTTTACACTGGTTAGCT GGTTATAGTGGTAGTAACATTTTCTTTAAAAAAATGTGTGGGTCCAAAGCCTTAAATCACTAAACTATATAAAAGGAGGC ATAGGAGGAGTAATGCACCAGATCAGATCATGAGGTGCAATGCTGCTTATCATAATTAGGAGAGAGAAGGGCCAAACTAA CTGTCTTGTGGGGAGTGTGTGTGGATCTGTCTAATGAGACTCAGAGTATAAGCATGGAAGGGGTAGGGAGGCTGAGGTAG GCTGGGAAATTGGGAGTGACTCAGTCTCTCAAATTGCTTTGGATAGCTCTTGTATACAACTCACTATCGATATCATTTGA TCCAAGGCCAAATGCATCTATCTTCATTTCATTTACATAAGCAATATCTTCATGTCAATTTTATTCAGTTATTTTTTCCC TTGATTTTTCTTTTTCTCTTGGTTGGAAACTATAAAATGGATTAAATATTTATCTAAATATATTGAAATCTCTGTCAGGT TCAACATGCCGGCTCAAACCATCACCCTTGAGTTGCAGAAAGATCTCAAGTTATTGAAGGTGCTTTTTAGTATTAACATC TCTCTGCCTTTTTATACACTTTTTCGTTCTACATTGTATACATTAGCAAGTTAAACTTTCATGCAATGGATATGTACATT TGAGGGTGGGTGAACACACAAACTTGAATGTATCCCGTCAATTTGTGTCATGCTATCTAATCTTGTTTTGGTACACCGCT CTTATCTTGAAACAGTTGAGGGGTGCCATTGATCCCAAGCGTCACTACAAGAAGGGTGATTCAAAATCAAAGACACTTCC CAAGTATTTCCAGGCAAGTTCATTTTTGTATACTACTACTATGTTGATCATTGACAAGCATATGCTTCAATATAGATTTG CTACATCAAATATGGTTAGCTTTAATTTTTGGATCATTGGAATATCATCAGATGGGAACAGTTGTAGATTCTCCATTGGA CTTCTTCTCAGGAAGATTAACAAAGAAGGAGAGGAGAGCATCATTAGCAGATGAGCTGCTTGCTGATCAAAACCTTGTAG CCTATAGGTAAGATAGGCAGTGAAGTATATAATTGTCTGCTTAAATAGACAATGCCTCTCAATGAAAATAGAAACTTGTT CATGCACTTTCCTATGCTCGTCAGGCTACTTACTCGTTGTTTATCAACTTTTTTCTAGGAAGCGGAAGGTTCGAGAAATT GAAGAACAAAACAAACCAGCTGGGAATGAAAATTGGAAGATTAAAGGCAGGAGTTCCCGGAAGCGAGCAAAAGAAAAGAG GAATCGCTGAATTTCCACCCTTTTTAAGATGTAGACACTCTCCTAAATGCTTTGATCAGTTTAGAATTATTATCATTATT TGAAAATATCCTAGTTATCTGTAAAACCTATTGATGCTGCATTTTTCCTTGTAACATTTTGGTGTGGCCATTGTCTTCAG TCTCAATCTGCTGCATGGCAATTCTCTTTCTACTTCACCCCTTTGTATATTAATGGTTGATAATCTTAATTATTAAAGGA TACTATATAATGAAGTGAAAAACAATTACATTTTATCAAATATCAAAT
CDS sequence (LotjaGi6g1v0254200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATTGAGAGATGGGTCAATTTTCCTAATTTGACCCAGTCTCCTTCCCATCCACCTCCGGCCACCGCGTCTCTGCT CCGTCCGGCTCTCAGGAATATGCCAGAAAAGAAGCCAGTGGTTGGGTTGACATGGCAACCGCAGTTGCCAGTTTCATCTT CATTAAAAGCCACAGATGGATCCCATATAAAAACTCAAATCGGGGCATCAAGAAGCACTGTTTGGAAACCCACTTCAGAG CTGGCTGATGGCCTTTTTGCTCCTCCAAATGATCCTAGAAAATTGAACAAGTTACTGAGAAAACAAGTTAAAGATACTGC TGGGAAAAATTGGTTCAACATGCCGGCTCAAACCATCACCCTTGAGTTGCAGAAAGATCTCAAGTTATTGAAGTTGAGGG GTGCCATTGATCCCAAGCGTCACTACAAGAAGGGTGATTCAAAATCAAAGACACTTCCCAAGTATTTCCAGATGGGAACA GTTGTAGATTCTCCATTGGACTTCTTCTCAGGAAGATTAACAAAGAAGGAGAGGAGAGCATCATTAGCAGATGAGCTGCT TGCTGATCAAAACCTTGTAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAACAAACCAGCTGGGAATGAAA ATTGGAAGATTAAAGGCAGGAGTTCCCGGAAGCGAGCAAAAGAAAAGAGGAATCGCTGA
Protein sequence (LotjaGi6g1v0254200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIERWVNFPNLTQSPSHPPPATASLLRPALRNMPEKKPVVGLTWQPQLPVSSSLKATDGSHIKTQIGASRSTVWKPTSE LADGLFAPPNDPRKLNKLLRKQVKDTAGKNWFNMPAQTITLELQKDLKLLKLRGAIDPKRHYKKGDSKSKTLPKYFQMGT VVDSPLDFFSGRLTKKERRASLADELLADQNLVAYRKRKVREIEEQNKPAGNENWKIKGRSSRKRAKEKRNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 35 | 230 | 196 | 4.7E-74 | ||
| Pfam | 104 | 199 | 96 | 1.8E-36 | ||
| MobiDBLite | 204 | 232 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0254200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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