Domain Predictions — View

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PF13540

Source: Pfam

Description

Regulator of chromosome condensation (RCC1) repeat

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0180549.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi\|502137188\|ref\|XP_004503000.1\|	Domains G3DSA:2.130.10.30 IPR009091 PF13540 SSF50985	4
Lj0g3v0364399.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi\|502137766\|ref\|XP_004503178.1\|	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF13540 PS00626 PTHR22870 PTHR22870:SF204 SSF50985	8
Lj2g3v1734790.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum] gi\|502161164\|ref\|XP_004512057.1\|	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS50012 PTHR22870 SSF50985	9
Lj3g3v3752270.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine/threonine-protein kinase-like protein CCR4-like [Cicer arietinum] gi\|502146255\|ref\|XP_004506371.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.510.10 G3DSA:2.130.10.30 G3DSA:2.60.120.200 G3DSA:3.30.200.20 IPR000719 IPR008271 IPR009091 IPR011009 IPR013320 IPR017441 NON_CYTOPLASMIC_DOMAIN PF00069 PF13540 PS00107 PS00108 PS50011 PTHR27003 PTHR27003:SF38 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00220 SSF50985 SSF56112 SignalP-noTM_EUK TMhelix TRANSMEMBRANE cd14066	30
LotjaGi2g1v0388800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G48330.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|I3SB19\|I3SB19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388800	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS50012 PTHR22870 SSF50985	9
LotjaGi2g1v0388800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G48330.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|I3SB19\|I3SB19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388800	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS50012 PTHR22870 SSF50985	9
LotjaGi2g1v0388800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G48330.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|I3SB19\|I3SB19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388800	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS50012 PTHR22870 SSF50985	9
LotjaGi3g1v0263700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G15430.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|A0A0R0H8T6\|A0A0R0H8T6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0263700	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS00626 PS50012 PTHR22870 PTHR22870:SF302 SSF50985	11
LotjaGi3g1v0263700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G15430.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q15034\|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3; TrEMBL-Plants: tr\|A0A0R0H8T6\|A0A0R0H8T6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0263700	Domains Coil G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS00626 PS50012 PTHR22870 PTHR22870:SF302 SSF50985	12
LotjaGi6g1v0067100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|I1LMJ3\|I1LMJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0067100	Domains G3DSA:2.130.10.30 IPR000408 IPR009091 PF00415 PF13540 PR00633 PS00626 PS50012 PTHR22870 PTHR22870:SF382 SSF50985 mobidb-lite	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00