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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0388800 |
| Transcript ID | LotjaGi2g1v0388800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G48330.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I3SB19|I3SB19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88492355..88497454) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAGTCTATTGGGCCGAATGAGTTATGGTGATCCAAATAGGCCCATAACATGATGGAATCTGAGAGGGAAGTGAACA AAGCAATGCTACGGTGAGCAAGTGAGCGAGGAACCGAAAAAAGAAAGAAATGTGGCGATCACGATCACATTCACTGGAAC TCTTGAGAATGTTTCAGGTGAAAGCGGTGCAGAGATGGATGAGCACGGTGATGAGTTTTGGAGATGGAACCCACGGTGCT CTCGGATTACCTTCCTCCGCCGTCGGTGTGGGACTCGACGCTTACGAACCTACCCCAATTCCTTCTCTACCTTCCGACAT TGTTAGCGTCCACGCCGGTCACTACCACTCCCTCGCCGTCACTTCTCAAGGTCACCTCTGGGCTTGGGGAAGAAACAACG AAGCTCAACTCGGCCCTGGTTTTTCTTCCAGGTAAAGTAAATGATAAATCCCATTACATGTTGTATAATTTGATGAATTG AAATTCGAATTGCGAATTTAACATTGTGTATGTGATGTGTGAATCAATGTGCAGTAGAGAATCATGGAATGAGCCGAAAA TGGTTGTGGGATTGGAGAATGTGAAGGTTTGTGCTGCTTATGCTTCTGGTGTGGTTTCTGCTGCGGTTGGTGATGATGGT TCTGTTTGGGTTTGGGGGAAATCCAAACGCGGCCAGCTTGGTCTCGGAAAAGGTGTCACTGAGGCTGTTGCACCTGCCAA ACTCGAAGCGCTTTCAGGGGAAAACGTAGCAAAGGTAGTTTTAAGTTTCTTGATTGATACCCTGGTTATGAATATTGTAT TCGAACTTAGAATTGATATCGTGTTTGTTTCTGTGGTTGAACAGGTTTCATTTGGTTGGGGGCATGCTCTTGCTCAGACT GTGGATGGCAAGTTGTTTGGCTGGGGCTATTTGGCAGATGGTAGGATAGGCAAAATGGGGAATCAATTGGAGGAATCTCC ATTGGATTCCGCTGCAGGCACGGTTTCGGACTTGGAAGTTGCTGAAAAGAGAGTCTTACAAGGGATGGAAAAGGAGAATG ACATGCCAACAGTATGGGAGCCTCGTCTGGTGGAAGAACTGCGCGGTGTTCATGTTGTCGACATTGCGTGTGGGCTTGAT CACTCTCTGATTCTTTGCCGTAAGTAACACTAATCCACAATTCAATTCTTTAGCTAGTTGTAGATGATGCATGGGGCTTC CTCTCAAGTATTGATTACCCCATATATCAGGTAATGGCGCCCTCTTAAGCTGCGGGAGCGACGCGTATGGCCAGTTGGGG CGAGCTAGACCGGATTTGGGGATTTTTCCGGTTGATATAAGCTTCAAGCCCGTTTCAATAGCTGCAGGGCTTGGCCATTC TTTGGCTATATGCGAGCTTGATGAATCGGATAGTAGTGTGGGGACTACAAACATTGCTTCATGGGGTTGGAACCAGAGTT CTCAGCTTGGGAGGACAGGGCCTGGGAACCTACCCTCTTTGATTGATGCATTGGATGGGGAAAATCCTGTTTCAGTATCA GGAGGGCGTGTACATTCGGTTGCTCTCACAGCAAAAGGAGAAATGTGGGTCTGGGGCTCTGGCAAAAATGGCAGACTCGG ATTGGCAAGTTCTGTTGACGAATTTGAGCCAATTCTTCTTGATACTTTAGAAGGTTTCCAAATTTTACAGGCCGTGTCAG GATTTGATCATAATCTGGTGCTAGTTGCTGGCTGATCTGGCGTTGAAGTTTTTTATTTTTCTGTGTGTTTGAGGTGGGGA GGAGAATAGATCAGACAAATAGAAAATAACATAGGACGAGGGAGGATAACATAGGTGCCTCTTTTAGGTTTAATCTTAAC TGTGGAGTTTGGGGGCACTCCCTTTCCTGGGTCCAAATGTAAAATGTGCTGTTTTGTTTGTAAGTCTGTAGTCTTATATG TTGCTCAAGTTTAGACCTCATCGAGGAATTTCATACTAACCCTTGAGAGTTGGTGATTCATGTTTTCCATGATATATAGT TTGACTTGTATGAATAAGTGCACTAAATCATGTATAAAGGTGATGCTAGTAAGATCATTATGAGTTTATGATGATAAAAC AATAGGGAGAAGCTGAGCTCTTCGCTCTTCAATGGTCTTGACCATGAAGTGTTTTGCAGAAGTGTTGGTCCAGATAGCTG GAGGGAATTGAAGAGACATGAGAAATGAAAATGCAATACTCACAGAAGTAACTAGAAAATACCGAATCAAATTTTGGAAT TTCAATTTCTGGAAATCCTCTAAATCTTTCCACACATGGTTTTCCTCTTATTTTATCAATTGAAAACCTTCTGCAACTTT CACAGGAAGGCTGAATAGACAAAAACACACTAAAATCATTGAATGTTGTTCAATACAATTTCTGTGGCTATTTTTTCATG GATGACTTGGCTAGCAGGCTGGAAGGTCCTTTGGTGGTGGCAGAACAGATTGATCTTGTCCTGGTCCATTTTCGACAACG AAAGCTGTCTTCAACCCCCAACCAGTGTGCAACTCCAAATGACAATGAAAGAACCAAACACCTGTGCAACCACATAATAC AAGAAAGTGTCATAATAGCAGAATAATTGTGTTATACACCATTCAACATTAGAGAACAACGCTTAATTTGTACAAGAGTT CATTGAAGGTTTCACTAGACGTACCTGGATTATCTGCCTGAAAACGAATTGCAGTCCAACCACCAGTAGGAACCCCAACT GTGTTCCTCTCGATAGGATCTACCAAGTTGTATTTTGCAGGATCTTTAGATGGATTGAAGTTACCAGTACCAGTTCCCAC AACAAAAAAGTTATAGCCATGAAGATGGAATGGATGTGACTCAACTGAGAGGAGGTTAGTGTCCTGCAAAACTAACTCCA CTGTAGAATTGAATGCAACCTTGCTAACTCTTGTGCCTGTTATAGTGGCAAGATTGGCGGTTAGCGGTGCACCAGTATAG TTGAAAGGAGTTGAAGGCCGATCAGGGAAATCAGTTCTGAAAACCCCCTTGTTATTGAAGTAGTGAGCTTGGAGAAGTGC TGTTTTTGGCATCACAAAAGTGACATTGTTTAACGAAGCAACCAAACGGGTTCCATTGATGCATGTGGGGCAAGAGTTCT TGCCTAAACTGATAGTGTAAAGGAGCTTCCGGTCAACTCTGAGGGGAACATTAGCAGGGTACTGAACAGAGTTCAAGCTT CTTATTTTCTTGTTGTAACTCAAAGCAAACCCTGTGTCATTGCTTGCAGGTAGATGAGGAAGAGAAGGGAGGACAGTGTT TGGGATGCCTCTGTATTGAAGTATAGCAGTGGCAGTTTTGTTGTCAACTGGGATCGGAGCATCCATGAAAGCCTTAGTGG CCATGAAGTATCTTCCTGAAACTTGGTTGGCTTGGACCAGAACATTTGTGGTCTGACCAGGTGCAATTAGTATAGCTTCA GTGGTGAATGGCTTTGTGTAAACAGCATCAACCTCCACCACTGTCATGTTGTGACCGGCAATGGCAAAGAATAGCTCATC ATTGAGGGCAGCGTTGATGATTCTCAGGAGGTAAGTCTTCCCTTGTTCTACCTCCATTGCATATGTGTCTGAAAATTGAA ACAAAATTGCACTTTAAACATAGATTTTACTCTCTTGAAAGCTGAAACTATAACCAAATGATTGCAATTTTCCTTACGCT TTTCAGAACATGGAAATAATGGTCCTGGTTTCCCGTTAATCGTATGTGCATCTGACATGTTTGGTGGCAACCCCATTTTG TTCCCTTGCTTTTCAATCTCTTCCACATCATTGTTCCACCATTCACCTATCTCATGCACAAACAATTAGTACTTTATAGC AAATCTCTTACTTTTTAGCTTTTATGGTTAGACACTTTTAAGTATTCTTGATAATCAAACTGACCTAGGAGGACTTCAAA TTCTCTGTCCGGCTGTGGGAATGGAAATGGTGTTCCAGGTTTAGGCATGATTACTATTGCACCATACACAGTGGCCCTCA GCCAGAGAATGTGTGCATGCCACCACAGTGTTCCTCTCTGCCCAGTAACGTTGAAGTTATAAGTATAGCTGCTTCCGGTC TGTATCGGACATTGTGTGATATAAGCTGGTCCATCCGCCCAACCATTACGATATTGTTTAAGTCCATGCCTATAATAACC ATATGGTTGTGAGAAAAACATATATATGCTAAAAGGCATCAAAAACTTCACCTACATATGTATTTGATTTATGAAATTGG GCTAAACCTACCAATGAATAGACATGTTGTATTGTGCATGGTTGGTGACATTAATCAGCACAGTATCCCCTTCCCTAACA TATATAGTTGGCCCTGGGAACCTCCCATTTACTGTTACAATGGGTTTTGCATGGCAAAGTCTGCTCACATTCGTCACTTG AACCTGTAGAAAGAACAAAATGCTATATCAAGGGAACTTTGCAAAGCTAGTTAGTTAAGCATGCTTGATTTTGATAAATG ATTCAATATAACTCACATCAAACTGGTATTTCTTTATGGCAGCTTCAGATGAAGAAGACATCAAGCCAATAAAGACAAAG AAGAGAAAGGTTAAGACAGACATGAAACAGCCCAACCTTGCCATTCTGTTTGATGTCAAACTTCTGTAAGCTCTAACTTA CTATCTTAGATTCTGCTTATGGATGCAAGCAATGGTGTTGGAGTATTTATATGAATGGTGGGAAGGTAAGATGGGCTATC AGTTTGTTGCATGAAGGATAAAAAAAACCTGAGGCTGATTTGGTGGTGCAGTAATGAGCTGTACATGAAAGCTTGTATGC CAAATACTGATAAGTTTTTTGAAGGCCTTGTGTTTTGTAGAAGCTGAGATTTCTAATGAAACAATATTTAGACAAGTCAT AATTGTTTATACAAAATTTCAACATTTGACCTGAAAGTGAGAGGTATATGAAACCAAACCAACCTTAATATACACTGGCT AGGCTTTATCTTTAAGGGGAAGTAATGGCTTAGGGGTGAGTCCTAATGCAAAGAATTATGTGTGTTGCCGCGTTCAAATG GAAGGTTCCCTTTCCAGAAAATAGCTTACCATCCATCAGAAATGTTTATTTCAGTTAATG
CDS sequence (LotjaGi2g1v0388800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGATCACGATCACATTCACTGGAACTCTTGAGAATGTTTCAGGTGAAAGCGGTGCAGAGATGGATGAGCACGGT GATGAGTTTTGGAGATGGAACCCACGGTGCTCTCGGATTACCTTCCTCCGCCGTCGGTGTGGGACTCGACGCTTACGAAC CTACCCCAATTCCTTCTCTACCTTCCGACATTGTTAGCGTCCACGCCGGTCACTACCACTCCCTCGCCGTCACTTCTCAA GGTCACCTCTGGGCTTGGGGAAGAAACAACGAAGCTCAACTCGGCCCTGGTTTTTCTTCCAGTAGAGAATCATGGAATGA GCCGAAAATGGTTGTGGGATTGGAGAATGTGAAGGTTTGTGCTGCTTATGCTTCTGGTGTGGTTTCTGCTGCGGTTGGTG ATGATGGTTCTGTTTGGGTTTGGGGGAAATCCAAACGCGGCCAGCTTGGTCTCGGAAAAGGTGTCACTGAGGCTGTTGCA CCTGCCAAACTCGAAGCGCTTTCAGGGGAAAACGTAGCAAAGGTTTCATTTGGTTGGGGGCATGCTCTTGCTCAGACTGT GGATGGCAAGTTGTTTGGCTGGGGCTATTTGGCAGATGGTAGGATAGGCAAAATGGGGAATCAATTGGAGGAATCTCCAT TGGATTCCGCTGCAGGCACGGTTTCGGACTTGGAAGTTGCTGAAAAGAGAGTCTTACAAGGGATGGAAAAGGAGAATGAC ATGCCAACAGTATGGGAGCCTCGTCTGGTGGAAGAACTGCGCGGTGTTCATGTTGTCGACATTGCGTGTGGGCTTGATCA CTCTCTGATTCTTTGCCGTAATGGCGCCCTCTTAAGCTGCGGGAGCGACGCGTATGGCCAGTTGGGGCGAGCTAGACCGG ATTTGGGGATTTTTCCGGTTGATATAAGCTTCAAGCCCGTTTCAATAGCTGCAGGGCTTGGCCATTCTTTGGCTATATGC GAGCTTGATGAATCGGATAGTAGTGTGGGGACTACAAACATTGCTTCATGGGGTTGGAACCAGAGTTCTCAGCTTGGGAG GACAGGGCCTGGGAACCTACCCTCTTTGATTGATGCATTGGATGGGGAAAATCCTGTTTCAGTATCAGGAGGGCGTGTAC ATTCGGTTGCTCTCACAGCAAAAGGAGAAATGTGGGTCTGGGGCTCTGGCAAAAATGGCAGACTCGGATTGGCAAGTTCT GTTGACGAATTTGAGCCAATTCTTCTTGATACTTTAGAAGGTTTCCAAATTTTACAGGCCGTGTCAGGATTTGATCATAA TCTGGTGCTAGTTGCTGGCTGA
Protein sequence (LotjaGi2g1v0388800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRSRSHSLELLRMFQVKAVQRWMSTVMSFGDGTHGALGLPSSAVGVGLDAYEPTPIPSLPSDIVSVHAGHYHSLAVTSQ GHLWAWGRNNEAQLGPGFSSSRESWNEPKMVVGLENVKVCAAYASGVVSAAVGDDGSVWVWGKSKRGQLGLGKGVTEAVA PAKLEALSGENVAKVSFGWGHALAQTVDGKLFGWGYLADGRIGKMGNQLEESPLDSAAGTVSDLEVAEKRVLQGMEKEND MPTVWEPRLVEELRGVHVVDIACGLDHSLILCRNGALLSCGSDAYGQLGRARPDLGIFPVDISFKPVSIAAGLGHSLAIC ELDESDSSVGTTNIASWGWNQSSQLGRTGPGNLPSLIDALDGENPVSVSGGRVHSVALTAKGEMWVWGSGKNGRLGLASS VDEFEPILLDTLEGFQILQAVSGFDHNLVLVAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 232 | 228 | 3.8E-45 | ||
| PANTHER | 7 | 152 | 146 | 2.2E-73 | – | |
| SUPERFAMILY | 24 | 320 | 297 | 2.09E-56 | ||
| ProSiteProfiles | 25 | 80 | 56 | 13.921 | ||
| PRINTS | 26 | 42 | 17 | 4.1E-19 | ||
| PRINTS | 64 | 77 | 14 | 4.1E-19 | ||
| Pfam | 64 | 91 | 28 | 6.2E-7 | – | |
| ProSiteProfiles | 81 | 143 | 63 | 10.625 | ||
| PRINTS | 83 | 99 | 17 | 4.1E-19 | ||
| PANTHER | 92 | 430 | 339 | 2.2E-73 | – | |
| Pfam | 135 | 184 | 50 | 1.1E-10 | ||
| PRINTS | 136 | 152 | 17 | 4.1E-19 | ||
| ProSiteProfiles | 136 | 188 | 53 | 14.303 | ||
| PRINTS | 175 | 191 | 17 | 4.1E-19 | ||
| ProSiteProfiles | 189 | 274 | 86 | 11.449 | ||
| PRINTS | 191 | 205 | 15 | 4.1E-19 | ||
| Gene3D | 233 | 433 | 201 | 3.0E-42 | ||
| Pfam | 258 | 287 | 30 | 5.1E-9 | – | |
| ProSiteProfiles | 275 | 322 | 48 | 9.921 | ||
| ProSiteProfiles | 332 | 381 | 50 | 11.589 | ||
| SUPERFAMILY | 333 | 430 | 98 | 4.45E-20 | ||
| Pfam | 336 | 378 | 43 | 1.6E-5 | ||
| PRINTS | 377 | 398 | 22 | 4.1E-19 | ||
| Pfam | 382 | 430 | 49 | 1.3E-6 | ||
| ProSiteProfiles | 382 | 433 | 52 | 14.001 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0388800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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