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PR00909

Source: PRINTS

Description

Bacterial periplasmic spermidine/putrescine-binding protein signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015846
Biological process Polyamine transport The directed movement of polyamines, organic compounds containing two or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0019808
Molecular function Polyamine binding Interacting selectively and non-covalently with polyamines, organic compounds containing two or more amino groups.
Subterm of
GO:0042597
Cellular component Periplasmic space The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).
Subterm of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj0g3v0075799.1
– RING-H2 finger protein ATL5F [Medicago truncatula] gi|357517389|ref|XP_003628983.1|
Domains
8
Lj0g3v0075799.2
– RING-H2 finger protein ATL5F [Medicago truncatula] gi|357517389|ref|XP_003628983.1|
Domains
7
LotjaGi4g1v0144500.1
– Putrescine-binding periplasmic protein; TAIR: AT1G31410.1 putrescine-binding periplasmic protein-like protein; Swiss-Prot: sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1; TrEMBL-Plants: tr|G7L742|G7L742_MEDTR Periplasmic polyamine-binding protein, putative; Found in the gene: LotjaGi4g1v0144500
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 33.33