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PS00323

Source: ProSitePatterns

Description

Ribosomal protein S19 signature.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 9

Transcript Name Description Predicted domains Domain count
Lj0g3v0318709.1
– PREDICTED: ribosomal protein S19, mitochondrial-like [Glycine max] gi|356525190|ref|XP_003531210.1|
Domains
16
Lj4g3v3112990.1
– PREDICTED: 40S ribosomal protein S15-4-like [Cicer arietinum] gi|502112438|ref|XP_004494331.1|
Domains
14
Lj5g3v1015870.1
– PREDICTED: 40S ribosomal protein S15-4-like [Cicer arietinum] gi|502115131|ref|XP_004495132.1|
Domains
14
LotjaGi3g1v0380200.1
– 30S ribosomal protein S19; TAIR: AT5G47320.1 ribosomal protein S19; Swiss-Prot: sp|P27527|RT19_PETHY Ribosomal protein S19, mitochondrial; TrEMBL-Plants: tr|V7D0E8|V7D0E8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0380200
Domains
16
LotjaGi3g1v0380200.2
– 30S ribosomal protein S19; TAIR: AT5G47320.1 ribosomal protein S19; Swiss-Prot: sp|P27527|RT19_PETHY Ribosomal protein S19, mitochondrial; TrEMBL-Plants: tr|V7D0E8|V7D0E8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0380200
Domains
16
LotjaGi4g1v0456200.1
– 30S ribosomal protein S19; TAIR: AT5G09500.1 Ribosomal protein S19 family protein; Swiss-Prot: sp|P31674|RS15_ORYSJ 40S ribosomal protein S15; TrEMBL-Plants: tr|I3SMI9|I3SMI9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0456200
Domains
14
LotjaGi4g1v0456200.2
– 30S ribosomal protein S19; TAIR: AT5G09500.1 Ribosomal protein S19 family protein; Swiss-Prot: sp|P31674|RS15_ORYSJ 40S ribosomal protein S15; TrEMBL-Plants: tr|I1KNN1|I1KNN1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456200
Domains
14
LotjaGi5g1v0176100.1
– 30S ribosomal protein S19; TAIR: AT1G04270.1 cytosolic ribosomal protein S15; Swiss-Prot: sp|O65059|RS15_PICMA 40S ribosomal protein S15; TrEMBL-Plants: tr|I3SNQ1|I3SNQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0176100
Domains
14
LotjaGi5g1v0176100.2
– 30S ribosomal protein S19; TAIR: AT5G09500.1 Ribosomal protein S19 family protein; Swiss-Prot: sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15; TrEMBL-Plants: tr|I3SNQ1|I3SNQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0176100
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR01025 TIGRFAM 1 11.11