Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PS50050

Source: ProSiteProfiles

Description

TNFR/NGFR family cysteine-rich region domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of GO:0005488

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v0381650.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine/threonine protein kinase-like protein ACR4 [Medicago truncatula] gi\|357454477\|ref\|XP_003597519.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.510.10 G3DSA:2.130.10.30 G3DSA:2.60.120.200 G3DSA:3.30.200.20 IPR000719 IPR001245 IPR001368 IPR008271 IPR009091 IPR011009 IPR013320 IPR017441 NON_CYTOPLASMIC_DOMAIN PF07714 PS00107 PS00108 PS50011 PS50050 PTHR27003 PTHR27003:SF87 SM00220 SSF50985 SSF56112 SignalP-noTM_EUK TMhelix TRANSMEMBRANE mobidb-lite	28
Lj5g3v0627080.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine/threonine-protein kinase-like protein CCR1-like [Glycine max] gi\|356536932\|ref\|XP_003536986.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.510.10 G3DSA:2.130.10.30 G3DSA:3.30.200.20 IPR000719 IPR001368 IPR008271 IPR009091 IPR011009 IPR017441 NON_CYTOPLASMIC_DOMAIN PF00069 PS00107 PS00108 PS50011 PS50050 PTHR27003 PTHR27003:SF24 SM00220 SSF50985 SSF56112 TMhelix TRANSMEMBRANE mobidb-lite	24
LotjaGi3g1v0033400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G59420.1 crinkly4; Swiss-Prot: sp\|Q9LX29\|ACR4L_ARATH Serine/threonine-protein kinase-like protein ACR4; TrEMBL-Plants: tr\|V7C0J8\|V7C0J8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0033400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.510.10 G3DSA:2.130.10.30 G3DSA:3.30.200.20 IPR000719 IPR001368 IPR008271 IPR009091 IPR011009 IPR017441 NON_CYTOPLASMIC_DOMAIN PF00069 PS00107 PS00108 PS50011 PS50050 PTHR47460 SM00220 SSF50985 SSF56112 SignalP-noTM TMhelix TRANSMEMBRANE mobidb-lite	24
LotjaGi5g1v0077900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G09780.1 CRINKLY4 related 1; Swiss-Prot: sp\|Q9S7D9\|ACCR1_ARATH Serine/threonine-protein kinase-like protein CCR1; TrEMBL-Plants: tr\|V7BH39\|V7BH39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0077900	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.510.10 G3DSA:2.130.10.30 G3DSA:3.30.200.20 IPR000719 IPR001368 IPR008271 IPR009091 IPR011009 IPR017441 NON_CYTOPLASMIC_DOMAIN PF00069 PS00107 PS00108 PS50011 PS50050 PTHR27001 PTHR27001:SF826 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00220 SSF50985 SSF56112 SignalP-noTM TMhelix TRANSMEMBRANE mobidb-lite	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00