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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Protein sumoylation | The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein. | ||
| Molecular function | SUMO transferase activity | Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|G7JQG1|G7JQG1_MEDTR E3 SUMO-protein ligase SIZ1; Found in the gene: LotjaGi2g1v0362700 | 25 | ||
| – | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 | 23 | ||
| – | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 33.33 |