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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Collagen metabolic process | The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana] gi|79375455|ref|NP_176975.2| | 6 | ||
| – | Prolyl 3-hydroxylase 1; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr|I1KRR4|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500 | 9 | ||
| – | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr|I1KRR4|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500 | 4 | ||
| – | Prolyl 3-hydroxylase 1; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr|I1KRR4|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SM00702 | SMART | 1 | 25.00 |