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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0357500 |
| Transcript ID | LotjaGi4g1v0357500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr|I1KRR4|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73612822..73618977) extracted from Lotus japonicus Gifu genome v1.2.
ATATCTCTCATTCCATCTTTCTTTCTTTTCTATCTATTTTTATTCATACCTGATATCTCTCATATCTCACATTTTAATCA AGTGTTATTTATACCTATTGATTGTATTAATACTAGGATACTATGCTATGCTTTTTCTTGTTTGCAAAACACAAGACAAA CCATGAGAATCTAATGTCAAAGGTTGAGCTAGAACCCCAACTCCAACACCCACGTCTCTTCATCCCCAACCTGCTCTCCC TTCACGAATGCAAGGAGTTGGAATTCATCCACAAGAGTAGCAGCACCGTTGGTTACAGACCCAATGTCTTCTCCACCACT CTCTCCCACCTCATCGCCACCAACTCCTCCCACCTCATCGTTCCTTTTATTCCAATCCGAGGTACCCATCTTAGAATTTC ACTTCCTTTCACAACCCATTTTCCCTTATTACATAAAGATTCCATCTTTAATGTTCTTTTCAGCATTTAGCAATCACTTT GAAATCAATGAAATTGGTGTTTTCCCATGTTTTTGACAGAAAGGTTGAAAGATAAGCTAGAGGAGTTTTTCAAATGTGAG TATGAGCTGTTTGTTGAATTTACGGGTTTAATAAGGTCGGTTGTCTCGCTCCAATGATCCAATGTTTGGCTGGCTTATGT GACTAGTATTTTATGTTTTACCATGTTCTGTTTGATACTATGTTGTATGATTATGAATCAGCTGGAGTAGAGGAGCTAGC ATTGGATGGCATAGTGATGATAACAGGCCTTACCTCAAGCAACGCCACTTTTCAGTGAGTGTTATTCTTGCAACCCTTTT TTAGATATTGATTTTCTGTTGTAATTTGCACTCTTGCTGATAGATAGCTTTTGTCTTCCTTTTGGTAAAACCATGAAAGG TTGTGTGCTATTTAAATACTTATGGGGAGGATTTCAATGGTGGACTCTTTCACTTCCAGGATGGTGAGCCAACATCAATT ATGCCTAAGGCCGGAGTGAGTTTTCCCAATTGTGAATTATAATATGTTTGTTTATGAATGAAAGTAGAAATGAGAAGCGT TTCACTGTTTTTATCTCCTTTAAGCTTGAATGTGATTGGTTTTCTAATTTTTTTTTTCAGGACGTTGTGATGTACACAGC TGATCCCCGAAATATTCATTCTGTTGATGAGGTATATTCCAGTCGAGTGCACTCCTTTCTTTCACGCCTATTTACTTGGT CACATTCATAAGCAGCTTTAGTTTTTCTTAAATTGTAAATTTGGACTCAATCACTCAAATCTTCATTGCCACCTCCCGAA CTCCTGAGCCCAAGAAAAAAAGCATATTTTTTGGAACTTCAAAGCATGATTCAACTTTTTCTTGTCTCATTAGTCATCTG CTATTAAAAGTAAACCAACAATTCATTTCCATAATGTAATGAATTATACAAAATCAGCAATTACAATCATTAACCATCAA ATAATTATGGAGATGAATACGAGTGCAGGTGACTATTCCTGCAAAAAATAATGGATACAGCAATATTTTAATGATATAAT AATGTTCTTCACTGTGAGTGCAGAAAACAAGGACAAACCATAACAAAGTTGTATGTGGGCTGTTGGCTGTCTAACACAAC CCTCCTCCTTTTTCTGGATTTGAGACTGCCTATGTAATGCATATAGGCAGAGGTTATCAATATAATACAAGTAGAGAAAA ACTCCCATATATTCTATTGATTAAATAAATTTATGATTGATGTGGGCAACAGTTGTAGATATTGTTTTAGGAGGACTAAA TGGATTTAAATCATTCTTTCATGGACCACATGGTAGTTCAATCATCAATAAATATATGGCCATCTTTAACCTTTCTAATG AAGTTATCTTTGACAGATAACTGATGGGGAAAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGG ATAAGAAGCTTGTTTCTCTACTTTCACAACACCTATTACATGAGAACATAGCCGATTCGTACCTACCTTTGCCTGCATCC AGTAATATGTACTGGTTTTCTCAGGACCAAGCTTCGAATAGCCGATTCGGTTTTAATATATGTTGGGCTAGACTGCATAT TCTTGGATATCACATATATATTTCCCAAGACAGTAGCTGTGAATCTGATATATCTGAACTAATGGTAAAGCCAGTGCGTT TAGCGAGGGGAAATGAGGTGCTAGACATGGAATTTGTCAATATTTTGCATGCACTTCAGGTATTTTAAATAATCCTTAGT TATATTTTCAGTTAATATTGAAAGATCAATTGTATAGCAAATGCACATACTATTCAATCAGTAATACTGGGTCTAACATA TTGTTTTCTGTTAATATTGAAAGATCAATTCTTGTAGTAGTAACTCTTTTTGAACCTGAGAATATTGAAGGGGTCTTAAA AAGTTCGGCAGGGCCCTCCAAGTTTCCTTTAGGAGACTTAAAAACAGATATTACATTTTCTCTGTGAATTGCATTTTTCG GTGTAATAACTGCAGTTAGTACTATTGTTTATGCATAACTGATTACTTGCAATTTACAATCTTGATGGGTTTTGCAAAGA TTTCTGCTGCTACTCTGATTCATGTTCTTTTGCTTCACAGGTTGTCCATTTCTATTGTTGGAAAGGATCTAGCTTACAAA CCAATGTGTCAAATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAAAGAGAAAAAATCAGTAGTCTAAATTCTATC CTTTTGAATGATTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTCCCAAGAAAATGCATGCATTTGCTTTGATTG GACAGGCATTGTGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAATTAAGCAAACAGATTAATTTACAGTTGCCTT ACTGGAGAATGCATGAATGTATATACAATGTACAATTGGATGAGCATTGAGCAATATCCGTGATCAACAATTCCAAGGAA AAGTAACCACTGGAAATTGCACTTGGGTTTAAGAATTGGAAAAGAGTAGAAGTTTGATAGCACGATTCAAGTTTGGGGGA CTTTTAAGACAAAGCTTCTTGGGGAGAGGCGAGGATGCAGCTCAAGGATATCTCAAGTGTGTTATGCATACTAGATGGCA AATACTGTATGCTCATGTTTCTAAAATATATGTAACATGAGTTTGGGTGCAATATTACAGCTACCATAAGCTCATTAATT ATGTTCGGATATTTGTTGGCACCAGTGCAAACAGACGTTGGCACTTCGAGATAAAAAGTGAATGAAACTCTTATGGATAA TTAGGTGACTAAACTGGTATCCTAACACAGACTAAAGTCTTTTTTCAAACGCAAGTTTGCTTTTATTTACAAATGGCTTA AAGGGTCCAAAGGCCCCTGAGATTACAAAGGGAATCAAATCTAGGACCTGAAAAATGTTCGCATCAAATTGAGTCCCTAA GAAATTTTTTTTAATTCAATTAAGGCCAAATGTTGCCACAGCTCAATTTTGTCCTAGTCACTTTTACCACGTGGCTTTTA TAATTATTTTTTAATTTAAAAATTATTTTTTTTAATTCCAACTCATTTATTTAAGTAGAAAAAAATTAAAAACTTAATAA ATCCCTAATTTAAATAAAATCCCTTAACTAAATAATTACCTAAATAATAACCTAATCTAATAATAACAAAAAACATCAAA CCCAACAAGAAATTAACAATCCCTTCAACATCAAACAACACAGATCTAGGGTTTCACTAACAATTCACAAATCTTCATCC TCACCCCAACAACTGTTATCTTCTTCCTCAACTCCCAAAAAACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCCCCACCCCCACCCACCCAACAAACTCAAATCTTCATCCTCAACCCCAACAACTG TTATCTTCTTCCTCAACTCCAAAAAAACTCATTCTTCTTCTTCTTCTTCCCCACCCCCACCCACCCACCCAACAAACTCA AATCTTCATCCTCAACCCCAACAACTGTTATCTTCTTCCTCAACTCCAAAAAAAATCATTCTTCTTCTTCTTCCCCACCC TCACCCACCCAACAAACCCAGACAACCAGAACCCCACCACCCTCAATCCACATGCAAATCCGAATTCAGTCTCACCTCAC CAACCTAGATCCAGTCCAGATCGAAGCATATCCGGACAAATTGATGCAAGGAGATGGCAAAGGTGCAACAAGGAGAGCTT GGGTTTGGCAATGGCAGCAAAAAAGGGTTGGGTGTGGTGGTTGGGGTGGGTTTCAGTTTTGCTGATTGCTGGCTAAAGAA GATGAAATTTGGGGTGGGTAGATAGTGGTGGTGCGTGGGTTTGGAGGTGTTGAGGTGGGTTGGGGTCTTGTTTCTGGAAT CTGAATTTTTGGTGTGGTTATGGGTTTTCAATGGTGGGGGTTGAAGAGGGGAGGAAGGTTGCAGAGAGTGTTTTGTTTTA TTTTTAGATTTAGGTTTTTATTTACATTAGAGATTTTATTAAGTTTTTTATTTTTTATTTATGCTTTAATATATGAGTTG GATTTAAAAAATTAAGTTTTAGGAAATTTTTCAATTAAAAAAAATTAAAATGCCACGTGGAAAAGCTGAGTAGGCTAAAA TTGAAGCCACTTCAGCATCAGACACACTTTGTCCTTAATTGAATTAAAAAAATTTTCTTAGGGACTCAATTTGATGCGAA AATTTTCCAGGTCCTGGATTTGATTCCCTTTGTAATCTCAGGGGCCTTTGGACCTTTAAGCCTTTACAAATAGTACATTT CTAACTCCAAATTTTCAGCTGGAGTGATATCTATTTGAACTCTATAGTACATTTCAAACGCCGGTTATATGCTTGCTTTT AGCTCATTATCTTCAGGCTGCTGTGAAAGTTCTTTGGATATGCTCCACCTATGCAAAGCATTGCCATACACGTCGTAGAA AACGAAATTTGCACTGGTTTCTGTGATCTGCACGGACATGAATCCCTGTCCATCATGATACAGCTTCATTTCTTCAGGGT CCCATGGCTTGACATCGCCCCTCCATGCCTTTGATCCACCTCCACTTGTTAAGAAGTGAATTCCACTTCATTGTACATGC AAACCAAGGAAGCATGAGTTTCAGAACAGTGATAATGTTCATGCAATGATGCTACCCATTTACAAGTAAGATATATGCTT ACCTCTTTTTGTCAATTATGTGCTCCAAGCAATGGTCATGTCCATTAATGTATAGATCAACATTGTTTGACTGGACCATT ATTGAAGAAACTAGTTAGAAATAGTCAAACTTTCATGCAATGACTTCAACAATAATAACTTAATAAGGAGCTTGGAATTT TAATATGGTCTAAGCTAATTAATTAGTTCAATACTTAATTACACCTTGTGTACATAATAAGTACTAAGGAGGCATTTGAT ATTAGTTTGCAAGATTGATTCTGTAGTCAAAATCAATCTTGAGAGGAGCTTCCATAAGTAGCTTCTGGGTGTCAAAATTG ATTCTGAAAAAAACGAAACTGATCCAAACATGCTATTAGATATACATGTTTGGAATGCCAATATTGCGGCAACATAGTTG TCATTACCAACATGCCATGTATGTTTTGAATCAATTTTTCAATAGTCATTCAAAACCATGAGAAATGTCTTAAACTTGAG TGATATAACGTATCAATAATCAATGTAGAATGACAAGGGACCGAATGCTCTTATTCATGAGAGTTAGATTCATTTACCTT TAAGATGGGAAGAAGTAGCTCATTAAGCTCCTGTGTATTACCATGATGCCCAGCACTTCGGATAGCATGATGACCAACCA CTATCTTCCATTTTGCCTTGGATTGTGCCAAAGCTGAATCAACATCCTACAGAAAGATTTAAGAAGCAATGTGGTGATTT CAAAGTTGCAATTCATTATAAAAAGTTGAATATGTTGTTCTTGAATATTTTGTGAAAATTTGTACACAATATTTCTTCTT TGTCACCAACCTTCAAGAGTCTTGAAATGTAATCTTTGCGAGGAAGTACTCCTTCCCAATCGTAGGTATGCTCTCCAGGG TCTGCGAAGTACTCTTCTACAAATGGATTTGTGTCCACAAAGAAAAATTCCACATTTTCTGTACAATTAATCAAAG
CDS sequence (LotjaGi4g1v0357500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTAAGGCCGGAGACGTTGTGATGTACACAGCTGATCCCCGAAATATTCATTCTGTTGATGAGATAACTGATGGGGA AAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGGATAAGAAGCTTGTTTCTCTACTTTCACAAC ACCTATTACATGAGAACATAGCCGATTCGTACCTACCTTTGCCTGCATCCAGTAATATGTACTGGTTTTCTCAGGACCAA GCTTCGAATAGCCGATTCGGTTTTAATATATGTTGGGCTAGACTGCATATTCTTGGATATCACATATATATTTCCCAAGA CAGTAGCTGTGAATCTGATATATCTGAACTAATGGTAAAGCCAGTGCGTTTAGCGAGGGGAAATGAGGTGCTAGACATGG AATTTGTCAATATTTTGCATGCACTTCAGGTTGTCCATTTCTATTGTTGGAAAGGATCTAGCTTACAAACCAATGTGTCA AATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAAAGAGAAAAAATCAGTAGTCTAAATTCTATCCTTTTGAATGA TTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTCCCAAGAAAATGCATGCATTTGCTTTGATTGGACAGGCATTG TGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAATTAAGCAAACAGATTAATTTACAGTTGCCTTACTGGAGAATG CATGAATGTATATACAATGTACAATTGGATGAGCATTGA
Protein sequence (LotjaGi4g1v0357500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKAGDVVMYTADPRNIHSVDEITDGERLTLALWFSRDGSHDEDKKLVSLLSQHLLHENIADSYLPLPASSNMYWFSQDQ ASNSRFGFNICWARLHILGYHIYISQDSSCESDISELMVKPVRLARGNEVLDMEFVNILHALQVVHFYCWKGSSLQTNVS NIDSKIVELSEVQREKISSLNSILLNDLDFASRDFCSMPSQENACICFDWTGIVNAVAAWEDYTSKLSKQINLQLPYWRM HECIYNVQLDEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 58 | 58 | 2.1E-5 | – | |
| PANTHER | 2 | 251 | 250 | 1.0E-74 | – | |
| PANTHER | 2 | 251 | 250 | 1.0E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Collagen metabolic process | The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). |
Expression pattern of LotjaGi4g1v0357500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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