Domain Predictions — View

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TIGR00813

Source: TIGRFAM

Description

sss: transporter, solute:sodium symporter (SSS) family

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of GO:0005575
GO:0022857 View details of GO:0022857 AmiGO InterPro QuickGO	Molecular function	Transmembrane transporter activity	Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.	Subterm of GO:0005215
GO:0055085 View details of GO:0055085 AmiGO InterPro QuickGO	Biological process	Transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.	Subterm of GO:0006810

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v1549800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Urea active transporter-like protein [Medicago truncatula] gi\|357484591\|ref\|XP_003612583.1\|	Domains CYTOPLASMIC_DOMAIN IPR001734 IPR031155 NON_CYTOPLASMIC_DOMAIN PF00474 PS50283 PTHR11819 PTHR11819:SF94 TIGR00813 TMhelix TRANSMEMBRANE cd11476	12
LotjaGi2g1v0344400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Urea-proton symporter DUR3; TAIR: AT5G45380.1 urea-proton symporter DEGRADATION OF UREA 3 (DUR3); Swiss-Prot: sp\|F4KD71\|DUR3_ARATH Urea-proton symporter DUR3; TrEMBL-Plants: tr\|G7K6S1\|G7K6S1_MEDTR Sodium:solute symporter family protein; Found in the gene: LotjaGi2g1v0344400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1730.10 IPR001734 IPR031155 IPR038377 NON_CYTOPLASMIC_DOMAIN PF00474 PS50283 PTHR46154 PTHR46154:SF4 TIGR00813 TMhelix TRANSMEMBRANE cd11476	14
LotjaGi2g1v0344400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Urea-proton symporter DUR3; TAIR: AT5G45380.1 urea-proton symporter DEGRADATION OF UREA 3 (DUR3); Swiss-Prot: sp\|F4KD71\|DUR3_ARATH Urea-proton symporter DUR3; TrEMBL-Plants: tr\|A0A1J7HDL9\|A0A1J7HDL9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0344400	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1730.10 IPR001734 IPR031155 IPR038377 NON_CYTOPLASMIC_DOMAIN PF00474 PS50283 PTHR46154 PTHR46154:SF4 TIGR00813 TMhelix TRANSMEMBRANE cd11476	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd11476	CDD	1	33.33