Domain Predictions — View

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cd17639

Source: CDD

Description

LC_FACS_euk1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0159900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Long-Chain Acyl-CoA Synthetase; TAIR: AT1G77590.1 long chain acyl-CoA synthetase 9; Swiss-Prot: sp\|Q9CAP8\|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic; TrEMBL-Plants: tr\|G7I8F2\|G7I8F2_MEDTR Long-chain fatty acyl CoA ligase, putative; Found in the gene: LotjaGi1g1v0159900	Domains G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PS00455 PTHR43272 PTHR43272:SF57 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF56801 cd17639	15
LotjaGi1g1v0260000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Long-Chain Acyl-CoA Synthetase; TAIR: AT1G77590.1 long chain acyl-CoA synthetase 9; Swiss-Prot: sp\|Q9CAP8\|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic; TrEMBL-Plants: tr\|Q2PEY2\|Q2PEY2_TRIPR Putative long chain acyl-CoA synthetase 9; Found in the gene: LotjaGi1g1v0260000	Domains G3DSA:3.30.300.30 G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PS00455 PTHR43272 PTHR43272:SF57 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF56801 SignalP-noTM cd05943 cd17639	18
LotjaGi1g1v0260400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Long chain acyl-CoA synthetase; TAIR: AT1G77590.2 long chain acyl-CoA synthetase 9; Swiss-Prot: sp\|Q9CAP8\|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic; TrEMBL-Plants: tr\|G7J4F3\|G7J4F3_MEDTR Bacterial long-chain fatty acid CoA synthetase; Found in the gene: LotjaGi1g1v0260400_LC	Domains PTHR43272 PTHR43272:SF57 cd17639	4
LotjaGi1g1v0260400_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Long chain acyl-CoA synthetase; TAIR: AT1G77590.2 long chain acyl-CoA synthetase 9; Swiss-Prot: sp\|Q9CAP8\|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic; TrEMBL-Plants: tr\|G7J4F3\|G7J4F3_MEDTR Bacterial long-chain fatty acid CoA synthetase; Found in the gene: LotjaGi1g1v0260400_LC	Domains PTHR43272 PTHR43272:SF57 cd17639	4
LotjaGi6g1v0025600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Long chain acyl-CoA synthetase; TAIR: AT2G04350.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp\|Q9SJD4\|LACS8_ARATH Long chain acyl-CoA synthetase 8; TrEMBL-Plants: tr\|K7N1D8\|K7N1D8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.12780 IPR000873 IPR020845 IPR042099 NON_CYTOPLASMIC_DOMAIN PF00501 PS00455 PTHR43272 PTHR43272:SF35 SSF56801 TMhelix TRANSMEMBRANE cd17639	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd17639	CDD	1	20.00