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GO:0001682

Overview

Field Value
Namespace Biological process
Short description TRNA 5'-leader removal
Full defintion Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P.
Subterm of

Relationships

The relationship of GO:0001682 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
PMID
This is the end: processing, editing and repair at the tRNA 3'-terminus.
Biol Chem. ; 382 (8): 1147–56.PMID: 11592395

The generation of a mature tRNA 3'-end is an important step in the processing pathways leading to functional tRNA molecules. While 5'-end processing by RNase P is similar in all organisms, generation of the mature 3'-terminus seems to be more variable and complex. The first step in this reaction is the removal of 3'-trailer sequences. In bacteria, this is a multistep process performed by endo- and exonucleases. In contrast, the majority of eukaryotes generate the mature tRNA 3'-end in a single step reaction, which consists of an endonucleolytic cut at the tRNA terminus. After removal of the 3'-trailer, a terminal CCA triplet has to be added to allow charging of the tRNA with its cognate amino acid. The enzyme catalyzing this reaction is tRNA nucleotidyltransferase, homologs of which have been found in representatives of all three kingdoms. Furthermore, in metazoan mitochondria, some genes encode 3'-terminally truncated tRNAs, which are restored in an editing reaction in order to yield functional tRNAs. Interestingly, this reaction is not restricted to distinct tRNAs, but seems to act on a variety of tRNA molecules and represents therefore a more general tRNA repair mechanism than a specialized editing reaction. In this review, the current knowledge about these crucial reactions is summarized.

Associated Lotus transcripts 3

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Ribonucleases P/MRP protein subunit POP1; TAIR: AT2G47300.2 ribonuclease Ps; Swiss-Prot: sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1; TrEMBL-Plants: tr|I1MI98|I1MI98_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0302000 3
Ribonucleases P/MRP protein subunit POP1; TAIR: AT2G47300.2 ribonuclease Ps; Swiss-Prot: sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1; TrEMBL-Plants: tr|V7AJR0|V7AJR0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0245400 3
Ribonucleases P/MRP protein subunit POP1; TAIR: AT2G47300.2 ribonuclease Ps; Swiss-Prot: sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1; TrEMBL-Plants: tr|V7AJR0|V7AJR0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0245400 3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Cellular component Nucleolar ribonuclease P complex 1 33.33