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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0245400 |
| Transcript ID | LotjaGi4g1v0245400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleases P/MRP protein subunit POP1; TAIR: AT2G47300.2 ribonuclease Ps; Swiss-Prot: sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1; TrEMBL-Plants: tr|V7AJR0|V7AJR0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0245400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59721920..59727638) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCTATTGTATCTATGATGTTGAGCCTATATTTGAATTTTGATGATATAAGTTGTTATTTTTATTTTTTTGATAATA AGTTGTTATTAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTTTTTAATATCATACTATCTAG TATCATACTATTGAGTTCTTTGTTATGTCTTTGCAGTTCCCACTTTTGCATCCTGGTGTTGAAAGAGTTTCTTTTTTTAG TTGCACATCTCTCCAACATCATCAGGTTCCATTAAAGGCTCTTTTACAGTTGTACCGGGCAGGTATGTATTTGTGTCCAT TTTATTATTGTTGGTGATAAGTGATATGGTTATCTCTGGTTAGTTAGGTAATGTAAGAATATGGGACTTGGTGTTGAAAT TTTCTTAAACGAACATACGCATGAAAAACGAGGATACTGTCGAATTTGATGGTTTTTGATTCCCTGTCCTACTCCCTATG CATTCTCGAGTTGCTTTTGGACTAGGTGGTGTTAGTTTAATTCTGATTAGGCCAATTTTTTTTAAAAAATACTCTTTACA GATTAGTTTGTGCCAGTACAATGTAAGCTAACTCTATCTATTTTTGGTACATAGTTCTTAACCATGCTTACTGAAGGAAC CAGAAAGCCTCAAGGTTCAGTACCTATACCACCTCGCAAAATCAATGTGCAGAAATATGCTAAATCACGTGCCCCGGAGC TCCTGAGCCTGCAATCTATCGTAGAAAATAGATTAAACAACAACTATAGCTCTCAAAGGAACAAGAGAAGAAGAACAACT GCATTTGATAGTCAAATCGCAAGAAAGGGGGGCAACAGAAAGAGGCAGAAACTGGGAACAGTTGATAAAGCCCATGATGA ATCAGTTTTGGAGAAGGACCAGTTAAAGAAGCTTCCTCGGCATATACGACGGAGATATGAACTTAAAATGAACCCAGAGA ATGGTTTTTGCACTTCTGGGGATGGAACCAAGAGACTGAGAACTCATGTTTGGCATGCAAAGCGTTTCGCCATGACAAAG CTGTGGGGTTACAACCTTCCACTGGGTTTTCAAGGAAGGTTGGTCATATTTTGATTAAAAAAAATAGAAACTGATTAAAT AGTCATTTTGGATGGGGTGGGGGCCTTGAAGCTTGTTCATTTAACTAATCCTTCTTTAGCTTGGAGGTTTAAATTGTATA GCGGAAGCTTGATGCAACATACAAGAAGTGTTTTTATTCTCTTGGAAACACTAACAAGGATTGTCTGTGTATCTATGCAG AGGGAAAGGTTCAAGGGCAGTCTTGAAAAGATTCAAAGAAGGTGTGCTTTTGCATGATTCTAGCTATTATACTGCTGTCC AATTGGAGGGTCCAGAGGTAGTTTATTTTCTTTTTCGTTGTTTAGATTTTCGAAGCACATTTAGTGCATGAATTTGCAGA TTCTCTTCCCCAAATAATAATGGTTTAATTTTCTCAGTGTAATTAAAGGTTTCCTCTTGTTTGTAGGATTCGTTAGTTTC AGTATTAAGAATGGTACTATTGCCCTCTCTGGAAACAGAAACGCCTGGAAATCATGATTTTTCTGTTCTTTCTGGTATAA CCTATGGAACTGCAATGGTGGGTGATCATTTTACTGACTCTAGAAAGTACCAGCTTTATTTGGTTAAACATAATTTTTTT TTCTTTCTTAACAGCTTTATCAAGTTGGAGCACCGGTTTCTCAGCCAATTGCTCCTGTGACCTATATATGGCGACCTACT TTCCCTCAAAATACGAGTACAGAGCTAGATGGCAGAAATCATCATACTTCTTTAAGTCAACATGATATCAATGATAACTT AAGTAATCATGATGCTGATTTATGTGAAAAATCAGATGTGATGAAGTGTGGTTCTTCATTTAGACACATTTGGGTGTGGA TACATGCTTCTGCATTTGAAGAAGGATATGATAGTCTAAAATTTGCCTGTCAGAAAGAGGTTCACTTTCTTCTTTATCTT TATAATAGGATATCCCATCTGTATTTAGTTTGTTTTATCTTTTCATAGTATATTTATTCTGGATAAAGATAGAAAAGGGA GAAGTTCCGGGAACCAGTGTACTCCAGTAGGTTTATGTAACAAATATTGTCATTTATTGAGCTATTCTCTATTCGCGTTG CCTATTTGAAAGACTTTCATTCAATGACACATTTCAGTGGCGAATGTCATTCATAATCAGCATGGTTCATCGTAGATCCA TGTGTCTCCCTAGCTTGTCATTATTCCTCAAATGCCGTAACTCTCCTGCTAGTAATGTATCTTTTTAGATAAATATTCCG TTCACATATCATATGAATCAATAATTGTGTTAGTGTTGCATGGAACCCTACTAAAGTTGAAAAACTTAAGAGTTGTAAAC TATATATAAACTCACATTATATGCTTTTTATCTTTATCTCTATTCAGATGGAAAAGAGCGGCGTCCTAATTAATTGCTTG TCACTTGAGGGCCAGCTTGGAAAATTAGAATTGATGGGATCACAGACATTTAATCTTCTTCAGAAGATATTGCATCCTGT CAGCAGGTTTGTTATTTAAATAGAAAAATAGTTCATTTGTTTAAATACATATAATGATAATGATAAAAAGGCCCTATCTT CTTGTTGACATTACAGTATTTCAGAGAATCATTGGCAGTTAAAGAAACATGTGGCTATAGAAGAAGACTCTGTTTCTCCG AGTATTAAGTCATCCATATTGAAAAGTGAGGAGCATTTTTCTTCTCATGCGATGTTATCTCTTAATGTGACGGATCCTCG AGAACTTCTGGGGAAAAGGACTATTACTCCAACAGAACCAATTTCAACTGAAGCACGGAGTGATGCACAAGAAACTAATA ACAATGAGCTTGCGAATTTAGGTGGAAAGTTTGAGAACAATAAAGGCTTATCTTCATTATCATGGTCAAAACTTGTAGAC AGCCAGTCTAATGTCGATGATCTATGGGATGCTTCCACCACAGGGTTAAGGCCCCCAGTGGAAGACAGTGTCCTTGCTAA AGAGAAACACTGTGAACGCATGGTTAATTTCTGTCTTGATGATATAGAGTCTGGGGAGGCGAACTCCTCAACCAAGGTGC GGTGCTCAAGATCTTGCCCTATTGTGCTTTTAAAAAATGATATGAAGGATTTGAGTATAGGGTAACTTCTTTAATCTATT TTTTCTTTAATTTTTTTTGAAATTACTGTTGTTGTTTATGAACATCTTTCAAGTACTTTTGCTTACTTTTTTCTATTTGA AAACTATAGGTATTTGCAATACCTACTTAAGATCTATGAGAAATAATAAGATGAACTTATCAAAATTTAAGTCTGAATAC CCTAGAGAGATCAAACTTGTTCCCTTGCGATGCGTGAAGTATGTGTTGAAACTTTTATGTTCATGAACCAACTACTGGAT GAAGACACATGGACGATTTTATGTTGTATATCTATCATGTCCCCTCATGCGAGAGCTAATTGGATTTAAAGCGTGAACCA TCCACATACCCACTAGCTTATGCTGAAATTCAACTTTTTATTAGAATAATGCAGGCAACAAGTATCAAACTCTAGAGCAC TTGGTCTTAGAGGCTTTGATACCATATCATTAATGAATTATCCCAAAAGCTTAAATGTTGGTTGAAGACACGTGAATGAT TTTATTTTATATTTTTAACACTTTTTATGTGATATATAATAATGCCTCTGTGATTATCTTTTAGATGGTCCATTATACTT CCCCTAAGTTGGGTCAAAGCCTTCTGGATTCCTCTCATCTCTAATGGGGCACATGCAATAGGTTTGCGAGAGAAGCACTG GATTGCGTGTGAAGTAAGTATAGCATCCCTACCCAAAAAATTCAAATTTGCTGCCTTTGTGTCAAATACTAAATATTGCA TGGGAACTTCTCTTTATACAGATAGAGCTACCATCTTTCCCTTCAGATTTCCCAGATTGCAAGGCATACTCATGCCAAAT GGCAGCTAAAGATGCTGTATTTAATAAAAAAGAAGAACTACGTCCTCCTTCCGTAAGGCGTTTTAAAGTTCCCATCCTGC CACCTTGGGGCATTGTTCGCACTACTTTCAATAAAGAAATTAGTGCGATGGACACTCTTGATCTTTCGACTACGGAAGAT TTGACCAGTGCTAATTCATTGCCAATCTCTTTCTCAGGAAGCTCTAAAATTTCAAATTTTAACTGTATGAATAATTCATT TGATGGAACTATAGCAAGAACAGGTAATATGCTGACTACTTTCATCAATGAAACCAAAGCTGGTCAATTGCTATTGTTTC CGCATGTAGCAGAAGGAAAGGACATAATCTCCAAGTTCATTAAGGGAGAACAAAATCTGGATCTCATGCATAAGAGCTCT GTCATTTATGACCATAAGCTATGTTTTCTAAGAGTTATTCTTCACCCGTTCAAGGAAGGCGTTTTTAAAGAGGGAGCAGT TATCTGTGCGCCATGTCTTTCTGATATATCTATGTGGACTTCAAGGTAATTTAACTTTGAAATTATGAATTCCTTGTTAT TAATAATTATGAACTTTTTGCTTGCTTGGAAATTAAGAACATCTATCATTTTTAATGTAATATAGAAGGGATTTAACTGT TCTACATTTGTAAAATGAGGTTGGTATTTTTTATGGTTTAAGAAATAAAAGGGGTTTTGTGTAATCAGTCAAAATGTTTA TTTTCATGAGTTCCACACAAGAAATGGTTGATCATTAACTAACAGTTCCATGAAGTGTTCATTAAAAATTAGATTTTTTA GGAATTAGTTAGAATTTCTTTTTTTTTTTTGAAGGGGGGGGGGGGAGGGGAAGGTTGGTTGGTTCAACAAATGCAATATA CAGGGGAGGTTAGAAAACTACAATGAAGAGTAACTTTAGTGTTTTAAATCCATATGTTATGACTGTGTATGCCATTGCAG TTCAGAGAAAAGCGAAAAGGAACTTCAACTGTCTCAGTCTGCTATGAAATTATACTTCAAAGAGCATTCCTCTGGTAAAT GGGGAATGCAGATACCAGAGGATTCAATTGCCAGAGCGTCTCACCGGTGGCCTATTGGCTTTGTCACAACAGCTTCGGTT CAAGGAAGGTATTGAAATCTTATCTTTTTTTTTTGGACCCTTCTTTCCTAATAATCTGAATATAAAATAGGTACACATTA AATGCCTTGTTGTGGAGAATCTTACCCTGTGCAATGTCATTGCAGCAAGAGGCTCGTAGCAGAGGGATTTTGTGAGGCAG TTTTACTGTCTCATTTAAGAGAGGAACAGTGGAAGGAGATGCCTGTGAAACAAAGGAGGAGGGAAATATACGTACTTGTC TGGAATTTACGATCCGTAGCATATAGACTTGCTCTAGCTTCTGTTGTTCTGGAAAATCAAAAAACTGACGTTGAGTTCTT TTAACATGTTATTATGCTGAACTGAACTATGCAACTTACATTGCTACATGTACAGTCAAATTGGAAACTTTCCTATTCAG AAAAAGAGGAAAGCAGCGGCAAAGAAGGAAATAGCTTAATCTTTTATATAATCATACATTTGAAGTTATCCGTAGTTGTA ATTGCTCGTAACATTTGAGCGTTGTAACTTATTTATCACTTTTTGTCAATGTTACTGGTTTTATATCATTGTCTTTGTTT AGTGACTGTGAAATAGAGAGAAGAGAAAATAAAACTAGC
CDS sequence (LotjaGi4g1v0245400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTACTGAAGGAACCAGAAAGCCTCAAGGTTCAGTACCTATACCACCTCGCAAAATCAATGTGCAGAAATATGCTAA ATCACGTGCCCCGGAGCTCCTGAGCCTGCAATCTATCGTAGAAAATAGATTAAACAACAACTATAGCTCTCAAAGGAACA AGAGAAGAAGAACAACTGCATTTGATAGTCAAATCGCAAGAAAGGGGGGCAACAGAAAGAGGCAGAAACTGGGAACAGTT GATAAAGCCCATGATGAATCAGTTTTGGAGAAGGACCAGTTAAAGAAGCTTCCTCGGCATATACGACGGAGATATGAACT TAAAATGAACCCAGAGAATGGTTTTTGCACTTCTGGGGATGGAACCAAGAGACTGAGAACTCATGTTTGGCATGCAAAGC GTTTCGCCATGACAAAGCTGTGGGGTTACAACCTTCCACTGGGTTTTCAAGGAAGAGGGAAAGGTTCAAGGGCAGTCTTG AAAAGATTCAAAGAAGGTGTGCTTTTGCATGATTCTAGCTATTATACTGCTGTCCAATTGGAGGGTCCAGAGGATTCGTT AGTTTCAGTATTAAGAATGGTACTATTGCCCTCTCTGGAAACAGAAACGCCTGGAAATCATGATTTTTCTGTTCTTTCTG GTATAACCTATGGAACTGCAATGCTTTATCAAGTTGGAGCACCGGTTTCTCAGCCAATTGCTCCTGTGACCTATATATGG CGACCTACTTTCCCTCAAAATACGAGTACAGAGCTAGATGGCAGAAATCATCATACTTCTTTAAGTCAACATGATATCAA TGATAACTTAAGTAATCATGATGCTGATTTATGTGAAAAATCAGATGTGATGAAGTGTGGTTCTTCATTTAGACACATTT GGGTGTGGATACATGCTTCTGCATTTGAAGAAGGATATGATAGTCTAAAATTTGCCTGTCAGAAAGAGATGGAAAAGAGC GGCGTCCTAATTAATTGCTTGTCACTTGAGGGCCAGCTTGGAAAATTAGAATTGATGGGATCACAGACATTTAATCTTCT TCAGAAGATATTGCATCCTGTCAGCAGTATTTCAGAGAATCATTGGCAGTTAAAGAAACATGTGGCTATAGAAGAAGACT CTGTTTCTCCGAGTATTAAGTCATCCATATTGAAAAGTGAGGAGCATTTTTCTTCTCATGCGATGTTATCTCTTAATGTG ACGGATCCTCGAGAACTTCTGGGGAAAAGGACTATTACTCCAACAGAACCAATTTCAACTGAAGCACGGAGTGATGCACA AGAAACTAATAACAATGAGCTTGCGAATTTAGGTGGAAAGTTTGAGAACAATAAAGGCTTATCTTCATTATCATGGTCAA AACTTGTAGACAGCCAGTCTAATGTCGATGATCTATGGGATGCTTCCACCACAGGGTTAAGGCCCCCAGTGGAAGACAGT GTCCTTGCTAAAGAGAAACACTGTGAACGCATGGTTAATTTCTGTCTTGATGATATAGAGTCTGGGGAGGCGAACTCCTC AACCAAGGTGCGGTGCTCAAGATCTTGCCCTATTGTGCTTTTAAAAAATGATATGAAGGATTTGAGTATAGGATGGTCCA TTATACTTCCCCTAAGTTGGGTCAAAGCCTTCTGGATTCCTCTCATCTCTAATGGGGCACATGCAATAGGTTTGCGAGAG AAGCACTGGATTGCGTGTGAAATAGAGCTACCATCTTTCCCTTCAGATTTCCCAGATTGCAAGGCATACTCATGCCAAAT GGCAGCTAAAGATGCTGTATTTAATAAAAAAGAAGAACTACGTCCTCCTTCCGTAAGGCGTTTTAAAGTTCCCATCCTGC CACCTTGGGGCATTGTTCGCACTACTTTCAATAAAGAAATTAGTGCGATGGACACTCTTGATCTTTCGACTACGGAAGAT TTGACCAGTGCTAATTCATTGCCAATCTCTTTCTCAGGAAGCTCTAAAATTTCAAATTTTAACTGTATGAATAATTCATT TGATGGAACTATAGCAAGAACAGGTAATATGCTGACTACTTTCATCAATGAAACCAAAGCTGGTCAATTGCTATTGTTTC CGCATGTAGCAGAAGGAAAGGACATAATCTCCAAGTTCATTAAGGGAGAACAAAATCTGGATCTCATGCATAAGAGCTCT GTCATTTATGACCATAAGCTATGTTTTCTAAGAGTTATTCTTCACCCGTTCAAGGAAGGCGTTTTTAAAGAGGGAGCAGT TATCTGTGCGCCATGTCTTTCTGATATATCTATGTGGACTTCAAGTTCAGAGAAAAGCGAAAAGGAACTTCAACTGTCTC AGTCTGCTATGAAATTATACTTCAAAGAGCATTCCTCTGGTAAATGGGGAATGCAGATACCAGAGGATTCAATTGCCAGA GCGTCTCACCGGTGGCCTATTGGCTTTGTCACAACAGCTTCGGTTCAAGGAAGCAAGAGGCTCGTAGCAGAGGGATTTTG TGAGGCAGTTTTACTGTCTCATTTAAGAGAGGAACAGTGGAAGGAGATGCCTGTGAAACAAAGGAGGAGGGAAATATACG TACTTGTCTGGAATTTACGATCCGTAGCATATAGACTTGCTCTAGCTTCTGTTGTTCTGGAAAATCAAAAAACTGACGTT GAGTTCTTTTAA
Protein sequence (LotjaGi4g1v0245400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTEGTRKPQGSVPIPPRKINVQKYAKSRAPELLSLQSIVENRLNNNYSSQRNKRRRTTAFDSQIARKGGNRKRQKLGTV DKAHDESVLEKDQLKKLPRHIRRRYELKMNPENGFCTSGDGTKRLRTHVWHAKRFAMTKLWGYNLPLGFQGRGKGSRAVL KRFKEGVLLHDSSYYTAVQLEGPEDSLVSVLRMVLLPSLETETPGNHDFSVLSGITYGTAMLYQVGAPVSQPIAPVTYIW RPTFPQNTSTELDGRNHHTSLSQHDINDNLSNHDADLCEKSDVMKCGSSFRHIWVWIHASAFEEGYDSLKFACQKEMEKS GVLINCLSLEGQLGKLELMGSQTFNLLQKILHPVSSISENHWQLKKHVAIEEDSVSPSIKSSILKSEEHFSSHAMLSLNV TDPRELLGKRTITPTEPISTEARSDAQETNNNELANLGGKFENNKGLSSLSWSKLVDSQSNVDDLWDASTTGLRPPVEDS VLAKEKHCERMVNFCLDDIESGEANSSTKVRCSRSCPIVLLKNDMKDLSIGWSIILPLSWVKAFWIPLISNGAHAIGLRE KHWIACEIELPSFPSDFPDCKAYSCQMAAKDAVFNKKEELRPPSVRRFKVPILPPWGIVRTTFNKEISAMDTLDLSTTED LTSANSLPISFSGSSKISNFNCMNNSFDGTIARTGNMLTTFINETKAGQLLLFPHVAEGKDIISKFIKGEQNLDLMHKSS VIYDHKLCFLRVILHPFKEGVFKEGAVICAPCLSDISMWTSSSEKSEKELQLSQSAMKLYFKEHSSGKWGMQIPEDSIAR ASHRWPIGFVTTASVQGSKRLVAEGFCEAVLLSHLREEQWKEMPVKQRRREIYVLVWNLRSVAYRLALASVVLENQKTDV EFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 875 | 861 | 1.9E-215 | ||
| Pfam | 26 | 182 | 157 | 2.7E-14 | ||
| MobiDBLite | 45 | 80 | 36 | - | – | |
| Pfam | 531 | 606 | 76 | 1.8E-15 | ||
| ProSitePatterns | 566 | 580 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Ribonuclease MRP complex | A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family, and cleaves the rRNA precursor as part of rRNA transcript processing. It also has other roles: In S. cerevisiae it is involved in cell cycle-regulated degradation of daughter cell-specific mRNAs, while in mammalian cells it also enters the mitochondria and processes RNAs to create RNA primers for DNA replication. | ||
| Biological process | TRNA 5'-leader removal | Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P. | ||
| Cellular component | Nucleolar ribonuclease P complex | A ribonuclease P complex located in the nucleolus of a eukaryotic cell, where it catalyzes the 5' endonucleolytic cleavage of precursor tRNAs to yield mature tRNAs. Eukaryotic nucleolar ribonuclease P complexes generally contain a single RNA molecule that is necessary but not sufficient for catalysis, and several protein molecules. |
Expression pattern of LotjaGi4g1v0245400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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