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GO:0019288

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
Full defintion The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
Subterm of

Relationships

The relationship of GO:0019288 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCgo_curators
PMID
The plastidial MEP pathway: unified nomenclature and resources.Phillips MA, León P, Boronat A, Rodríguez-Concepción M
Trends Plant Sci. 2008 Dec; 13 (12): 619–23.PMID: 18948055

In plants, the plastid-localized 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway provides the precursors for the synthesis of isoprenoid hormones, monoterpenes, carotenoids and the side chain of chlorophylls, tocopherols and prenylquinones. As a result of the fast progress in the elucidation and characterization of the pathway (mainly by genetic approaches in Escherichia coli and Arabidopsis thaliana), different names have been used in the literature to designate the orthologous bacterial and plant genes and the corresponding null and partial loss-of-function mutants. This has led to a confusing variety of naming conventions in this field. Here, we propose a reorganization of the various naming systems with the aim of facilitating the dissemination and sharing of genetic resources and tools central to plant isoprenoid research.

MetaCycNONMEVIPP-PWY

Associated Lotus transcripts 2

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj3g3v3338280.1
– PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Cicer arietinum] gi|502149126|ref|XP_004507401.1|
GO terms
4
LotjaGi3g1v0505400.1
– 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TAIR: AT4G34350.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Swiss-Prot: sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic; TrEMBL-Plants: tr|I3S4J9|I3S4J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0505400
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0051745
Molecular function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 1 50.00