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LotjaGi3g1v0505400.1

Overview

Field Value
Gene ID LotjaGi3g1v0505400
Transcript ID LotjaGi3g1v0505400.1
Lotus japonicus genome version Gifu v1.2
Description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TAIR: AT4G34350.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Swiss-Prot: sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic; TrEMBL-Plants: tr|I3S4J9|I3S4J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0505400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:92293533..92297009) extracted from Lotus japonicus Gifu genome v1.2.

ATGAACCATTCTTCGTCCTCATCATCTTAACAAACCGCCAAATTTGTCAATCCCAGAATCACTCACCTTACCAGAAAAAA TCAAAAAAGAATCAACAAGTTACCATATAACATAATACTATATAATATGTAAAACTAAAACAATTTTAATCCCAGAATGT TAAAAAAATAAATAAATATTATCATAATTTTTTTGACTATTTTAATAATACCAATGTTCTTATTACACAATCCATGAAAA CAAAGAGAGACACAGAGACAGAGAGAAGGTGATTGTGTTGACTTGCTGTGACATTGTCTTCTCCGATGGCTTTCTGCACC AACATTCTCCGTCTTCCTACTGCTCGAAACGACATCGTTTTGCCGGAAAGTGTTACCAGAACACCGTGCCGGAAACTGTT CTCCGTCGTGCGATGCTCCTCCGCCGATCCCGATTTTGATGCCAAGGTGTTCCGGAAGAATCTCACCAGGAGTGCCAATT ATAATCGCAAAGGGTTTGGTCACAAGGAGGAGACTCTCAAGCTCATGAATCGCGAGTACACTAGTATGTTGTTTTCTTCT TTGCTTTTCACACCCCACTTCAGTTTTTCATTGGAATTCGATTCAGTTTTGCTGATTTTTATCTGGGCACGTGTTTGATT TTGGTTTCCATCATCAATTTTTTGTTTACTGTGGAAAAGCCTGTTGCTTTTTATCTGGGCATGTGTTCAATTTTCTGGTT AATTTCTTGTTATTGAGTTGAGTTGTAGTGAAATTGAGCTCATAATTAGTGTTATCCTTATGGTTTGATTGAGATTTTCC TTTAGATTTGATGTGAGGTGTTGTTGTGGTCTCTGTGTAATTTGTAGTGATTTTGTGTGTGCCCTGTTTTGTTGATTTCA GGTGACATTATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTAATGTCACTGTGATGCTGGCTGAAGCATA TGGCTTCTGTTGGGGAGTTGAGAGGGCTGTTCAGATTGCTTATGAGGCGAGAAAACAGTTTCCTGATGAGAAGATATGGC TTACCAATGAAATCATCCACAACCCAACTGTTAATAAGGTAAACACATTTCCTATCACAATCAATTATTCAATTATGTCG AATTATTCGAAGCGGTACTTTGAAGTTGTGCTATACAGCATATGAGGTTAGTTAAGGTGGTTTCATTTGATGAACTTGAT CATTGCATTGTTTCTTGCTGATGCCATCTTTTAACATGGTACATAATGTTGATTGGTGAACTTGATAAATTATTGATGCA GCGGCTCGAGGATATGCAAGTGCAGAATATTCCTTTGGAGGATGGGAAAAAACAATTTGATGTTGTCAACAAGGGTGACG TGGTCATGTTTCCTGCTTTTGGAGCAGGAGTGGATGAGATGTTGACATTGAGCGAGAAAAATGTTCAAATCGTTGATACT ACTTGCCCCTGGGTTTCAAAGGTACTTATATGTAGAGATGGTTTTTCTGTTGTGCTGATAAGCATCAGTTGAATTCATAT ATCAACTTGCATCTACAGATATTGAGATTATTTCTTCAATAAATAATTTTAAGGTATGGAACACTGTTGAGAAGCACAAG AAAGGAGATTATACCTCGATTATTCATGGTAAATATGCCCATGAGGAAACCATAGCAACTGCATCTTTTGCTGCAAAGTA TATTATTGTGAAGAATATGGCAGAGGTTTGTCCTAATTTGCTGCTAATAATCAATTGTCTGATGTATGCCTTAACTTGAA GAAATTTATGGTATTTTTTCATAACCGATACCTTTATCCAGGCTGAATATGTTTGCGACTATATTCTTGGCGGTGAACTA AATGGATCCAGTTCAACCAAAGAAGCATTACTAGAGGTATGACTTTTGTCATGTGATTAATCTTGCATTCAAAACCCTCT GGTCTTCATTGTCATGAACTTGGAATTTTTTTCTGCAGAAATTTAAGTTTGCAGTTTCTAAAGGCTTTGATCCAGACACT GACCTGGTAAAACTAGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGATATAGGTTAGTTTTGTTTAAT TTTGTGAATTGGGGGGGGGGGGGGGGATGGGACTCTCACGTTATCTCTTTATAGATTTTTAGTTCTTGTGATATTTATTT TTTTATTGTTTCTCAGGTAAACTGGTGGAAAGGACGATGATGCGCAAATTTGGTGTGGAAAACGTCAATGAGCACTTTAT AAGCTTCAACACAATTTGTGATGCTACTCAGGTAGTTTCACTTTTCCACTCTAGTCTTTGATGTTCTTGCCTATTTTTTA TGAGTTAAATTGTGATTGCAGCTTTTTTTAAGCCAGTTATAAGTTAGCACCATCCATAACATACTCATGACATGTAACTG GCCATTATATGTGCATTCTAACCAACAGCTAAATTGAATTTTCTTTCAGGAGAGACAAGATGCTATGTACAAGCTGGTTG AGAGAGATATGGATCTTATGTTAGTAGTTGGTGGCTGGAACTCGAGCAACACATCGCACCTGCAAGAGATAGCTGAGGAA CGCAGAATTCCTTCTTACTGGATTGACACTGAGCAGAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTAATGGTGAG TAAGAATGAATGAAGAGATTTATACCTTATCAACTGTTAGCTCTTTTTGACCTTCATCATTCATAGTAATCTTTATCTTT TTGTTTTTCAGCATGGTGAGCTGGTGGAGAAAGAAAACTTTCTGCCACAGGGTCCAATAACTATTGGTATAACATCTGGT GCATCAACACCAGACAAGGTAATTTCCCTTGCCTTGCTTGTGAAATGATGAAACTTGTAGCCTTTATTTCATTCTTATTC GTTTTTGTGATTTTCTCCAATATATCTCTGCTTCTTGTAATGAATGTAGTTTTAGCTCCTGGTGCATATGACATGTATCG TATTTAATAATGCACCATCCTTTCAGTTTTATCTAATAGTATCCAGTTCAATTCTTTTGATACTAATTTGCATAGTTGGA TCTCAAACAGGTTGTTGAAGACGTGCTTATCAAGGTGTTTGACTTGAAACGGGAAGAAGCATTGCAGCTCGCTTAAAGTA GGTCTGAGCATACATACTTGTTAATGTAAAATGATACTCAGGACTTGAACTGAAGGACTTATTACAGTTCAAATTGTAGA ATTTATTAAATGACAAAGCATAATGTTGAATAAAGTTATTATAATTTTTTTGCTACTAGGAGATGAAAGTATATTTACTA TTTAGTCATAGCATTGTCGCTCGAATGGATGCCAGAAGACTCGTGTTTGGGTCAGCCGTGTCAAAATAAATATTACTTTA AAAAACGATTGTCAAAATAAATATTGAATACAGTAGATTTTGATCAACTTGATTATGATTAAAGTGATTTGAGAGTATTT TCCGATGTAGCAAAAAAAAGTGATTTGAGAGTGAAAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0505400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTTCTGCACCAACATTCTCCGTCTTCCTACTGCTCGAAACGACATCGTTTTGCCGGAAAGTGTTACCAGAACACC GTGCCGGAAACTGTTCTCCGTCGTGCGATGCTCCTCCGCCGATCCCGATTTTGATGCCAAGGTGTTCCGGAAGAATCTCA CCAGGAGTGCCAATTATAATCGCAAAGGGTTTGGTCACAAGGAGGAGACTCTCAAGCTCATGAATCGCGAGTACACTAGT GACATTATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTAATGTCACTGTGATGCTGGCTGAAGCATATGG CTTCTGTTGGGGAGTTGAGAGGGCTGTTCAGATTGCTTATGAGGCGAGAAAACAGTTTCCTGATGAGAAGATATGGCTTA CCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTCGAGGATATGCAAGTGCAGAATATTCCTTTGGAGGATGGG AAAAAACAATTTGATGTTGTCAACAAGGGTGACGTGGTCATGTTTCCTGCTTTTGGAGCAGGAGTGGATGAGATGTTGAC ATTGAGCGAGAAAAATGTTCAAATCGTTGATACTACTTGCCCCTGGGTTTCAAAGGTATGGAACACTGTTGAGAAGCACA AGAAAGGAGATTATACCTCGATTATTCATGGTAAATATGCCCATGAGGAAACCATAGCAACTGCATCTTTTGCTGCAAAG TATATTATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGCGGTGAACTAAATGGATCCAGTTC AACCAAAGAAGCATTACTAGAGAAATTTAAGTTTGCAGTTTCTAAAGGCTTTGATCCAGACACTGACCTGGTAAAACTAG GCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGATATAGGTAAACTGGTGGAAAGGACGATGATGCGCAAA TTTGGTGTGGAAAACGTCAATGAGCACTTTATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTAT GTACAAGCTGGTTGAGAGAGATATGGATCTTATGTTAGTAGTTGGTGGCTGGAACTCGAGCAACACATCGCACCTGCAAG AGATAGCTGAGGAACGCAGAATTCCTTCTTACTGGATTGACACTGAGCAGAGAATTGGTCCAGGAAACAGAATAGCATAC AAGTTAATGCATGGTGAGCTGGTGGAGAAAGAAAACTTTCTGCCACAGGGTCCAATAACTATTGGTATAACATCTGGTGC ATCAACACCAGACAAGGTTGTTGAAGACGTGCTTATCAAGGTGTTTGACTTGAAACGGGAAGAAGCATTGCAGCTCGCTT AA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0505400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAFCTNILRLPTARNDIVLPESVTRTPCRKLFSVVRCSSADPDFDAKVFRKNLTRSANYNRKGFGHKEETLKLMNREYTS DIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVQNIPLEDG KKQFDVVNKGDVVMFPAFGAGVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATASFAAK YIIVKNMAEAEYVCDYILGGELNGSSSTKEALLEKFKFAVSKGFDPDTDLVKLGIANQTTMLKGETEDIGKLVERTMMRK FGVENVNEHFISFNTICDATQERQDAMYKLVERDMDLMLVVGGWNSSNTSHLQEIAEERRIPSYWIDTEQRIGPGNRIAY KLMHGELVEKENFLPQGPITIGITSGASTPDKVVEDVLIKVFDLKREEALQLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31619:SF5
14 452 439 1.1E-263 –
PANTHER
PTHR31619
14 452 439 1.1E-263 –
Hamap
MF_00191
98 445 348 28.928
IPR003451
Pfam
PF02401
100 439 340 3.6E-82
IPR003451
TIGRFAM
TIGR00216
100 440 341 2.8E-89
IPR003451
CDD
cd13944
100 438 339 1.36823E-105
IPR003451
Gene3D
G3DSA:3.40.50.11270
109 199 91 9.7E-16 –
Gene3D
G3DSA:3.40.1010.20
200 257 58 6.7E-6 –
Gene3D
G3DSA:3.40.1010.20
320 453 134 6.4E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0019288
Biological process Isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0050992
Biological process Dimethylallyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.
Subterm of
GO:0051745
Molecular function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0505400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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