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Field | Value |
---|---|
Namespace | Molecular function |
Short description | Beta-amyrin synthase activity |
Full defintion | Catalysis of the reaction: (S)-2,3-epoxysqualene = beta-amyrin. This reaction is the cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into beta-amyrin. |
Subterm of |
The relationship of GO:0042300 with other GO terms.
Relationship type | GO terms |
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Is a | |
Regulates | n.a. |
Part of | n.a. |
Positively regulates | n.a. |
Negatively regulates | n.a. |
A force layout showing the ancestor tree for GO:0042300, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.
This table contains additional metadata associated with the GO entry's definition field.
Field | Value |
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PMID | Beta-amyrin synthase--cloning of oxidosqualene cyclase that catalyzes the formation of the most popular triterpene among higher plants. Eur J Biochem. 1998 Aug 15; 256 (1): 238–44.PMID: 9746369 Beta-amyrin, a typical pentacyclic triterpene having an oleanane skeleton, is one of the most commonly occuring triterpenes in nature and is biosynthesized from (3S)-2,3-oxidosqualene. The enzyme, beta-amyrin synthase, catalyzing the cyclization of oxidosqualene into beta-amyrin, generates five rings and eight asymmetric centers in a single transformation. A homology-based PCR method was attempted to obtain the cDNA of this enzyme from the hairy root of Panax ginseng which produces oleanane saponins together with dammarane-type saponins. Two sets of degenerate oligonucleotide primers were designed at the regions which are highly conserved among known oxidosqualene cyclases (OSCs). Nested PCRs using these primers successfully amplified the core fragment which revealed the presence of two OSC clones PNX and PNY. Specific amplification of each clone by 3'-RACE and 5'-RACE was carried out to obtain the whole sequences. The two clones exhibited 60% amino acid identity to each other. A full-length clone of PNY was ligated into the yeast expression vector pYES2 under the GAL1 promoter to give pOSC(PNY). Beta-amyrin production was observed with the mutant yeast lacking lanosterol synthase, transformed by this plasmid. The sequence of pOSC(PNY) contains an open reading frame of 2289 nucleotides which codes for 763 amino acids with a predicted molecular mass of 88 kDa. Sequence comparison with other OSCs showed a high level of similarity with lanosterol, cycloartenol and lupeol synthases. The other clone, pOSC(PNX), was shown to be cycloartenol synthase by similar expression in yeast. The present studies have revealed that distinct OSC exists for triterpene formation in higher plants, and the high level of similarity with cycloartenol synthase indicates close evolutional relationship between sterol and triterpene biosynthesis. |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Transcript | Name | Description | GO terms | GO count |
---|---|---|---|---|
– | Oxidosqualene cyclase [Lotus japonicus] gi|108743267|dbj|BAE95409.1| | 5 | ||
– | Oxidosqualene cyclase [Lotus japonicus] gi|108743267|dbj|BAE95409.1| | 5 | ||
– | Oxidosqualene cyclase [Lotus japonicus] gi|108743267|dbj|BAE95409.1| | 5 | ||
– | Lanosterol synthase [Lotus japonicus] gi|108743269|dbj|BAE95410.1| | 5 | ||
– | Cycloartenol synthase [Lotus japonicus] gi|83016479|dbj|BAE53431.1| | 5 | ||
– | Lupeol synthase [Lotus japonicus] gi|83016477|dbj|BAE53430.1| | 5 | ||
– | Lupeol synthase [Lotus japonicus] gi|83016477|dbj|BAE53430.1| | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Multifunctional beta-amyrin synthase [Lotus japonicus] gi|28194508|gb|AAO33580.1|AF478455_1 | 5 | ||
– | Beta-amyrin synthase [Lotus japonicus] gi|83016474|dbj|BAE53429.1| | 5 | ||
– | Beta-amyrin synthase [Lotus japonicus] gi|83016474|dbj|BAE53429.1| | 5 | ||
– | Beta-amyrin synthase [Lotus japonicus] gi|83016474|dbj|BAE53429.1| | 5 | ||
– | Beta-amyrin synthase [Lotus japonicus] gi|83016474|dbj|BAE53429.1| | 5 | ||
– | Beta-amyrin synthase [Glycyrrhiza uralensis] gi|294488497|gb|ADE88148.1| | 5 | ||
– | Oxidosqualene cyclase [Lotus japonicus] gi|108743267|dbj|BAE95409.1| | 5 | ||
– | Lanosterol synthase [Lotus japonicus] gi|108743269|dbj|BAE95410.1| | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|E2IUB0|CASS_KALDA Cycloartenol synthase; TrEMBL-Plants: tr|Q1ERD3|Q1ERD3_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235000 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|P38605|CAS1_ARATH Cycloartenol synthase; TrEMBL-Plants: tr|Q1ERD4|Q1ERD4_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235100 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase; TrEMBL-Plants: tr|Q2WGL6|Q2WGL6_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235200 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase; TrEMBL-Plants: tr|Q2WGL6|Q2WGL6_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235200 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase; TrEMBL-Plants: tr|Q2WGL6|Q2WGL6_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235200 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q764T8|LUPS_GLYGL Lupeol synthase; TrEMBL-Plants: tr|Q2WGL7|Q2WGL7_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235400 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q764T8|LUPS_GLYGL Lupeol synthase; TrEMBL-Plants: tr|Q2WGL7|Q2WGL7_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235400 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q764T8|LUPS_GLYGL Lupeol synthase; TrEMBL-Plants: tr|Q2WGL7|Q2WGL7_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235400 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q764T8|LUPS_GLYGL Lupeol synthase; TrEMBL-Plants: tr|Q2WGL7|Q2WGL7_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235400 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT2G07050.1 cycloartenol synthase 1; Swiss-Prot: sp|Q764T8|LUPS_GLYGL Lupeol synthase; TrEMBL-Plants: tr|Q2WGL7|Q2WGL7_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi2g1v0235400 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78950.1 Terpenoid cyclases family protein; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q84PE1|Q84PE1_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0338300 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q84PE1|Q84PE1_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0339100 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q84PE1|Q84PE1_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0339100 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78950.2 Terpenoid cyclases family protein; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q2WGL8|Q2WGL8_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0340000 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78950.1 Terpenoid cyclases family protein; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q2WGL8|Q2WGL8_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0340000 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q2WGL8|Q2WGL8_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0340000 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78950.2 Terpenoid cyclases family protein; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|Q2WGL8|Q2WGL8_LOTJA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0340000 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78950.2 Terpenoid cyclases family protein; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|A0A1D8GS88|A0A1D8GS88_9FABA Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0537500 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|D7P7W7|D7P7W7_GLYUR Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0537800 | 5 | ||
– | Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|D7P7W7|D7P7W7_GLYUR Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0537800 | 5 |
A list of co-occurring GO terms within the L. japonicus gene space:
GO term | Namespace | Name | Observations | Saturation (%) |
---|---|---|---|---|
Molecular function | Beta-amyrin synthase activity | 1 | 2.50 |