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LotjaGi3g1v0537800.2

Overview

Field Value
Gene ID LotjaGi3g1v0537800
Transcript ID LotjaGi3g1v0537800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Terpene cyclase/mutase family member; TAIR: AT1G78955.1 camelliol C synthase 1; Swiss-Prot: sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase; TrEMBL-Plants: tr|D7P7W7|D7P7W7_GLYUR Terpene cyclase/mutase family member; Found in the gene: LotjaGi3g1v0537800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:95447341..95449892) extracted from Lotus japonicus Gifu genome v1.2.

CTTGTATTATCATCTTTTTAGAGGTCTAGCTTACTTCCATCACTTTAATTTGTAAGAAAGCTAGATGCTTTCTATTTTAC ATATATGTTAGTGGCCAAGTAGACTCTGGATCTTTTTTTTGCTCACTTACAATAATGAATTGGAATAGTTTTTTATTTCA CAGGTTAAGGACAACCCTTCAGGAGATTTTAAAAGTATGTCACGTCATATTTCTAAAGGATCATGGACCTTCTCTAATCA GGACAATGGATGGCAAGTTTCTGATTGTACTGCAGTGAATTTGACGGTAATTAACTTGATTCGCTTGAACTTAATTTGTT TTAGTCATGTGTTAAGACTAGACAAATCAAATTAAATTTTGTTTCAGTGTTGCCTATTGTTATCAATGTTACCATCAGAG CTAGTTGGTGAAAAGATGGATGCTGAAAGGTTATTTGATTCAATCAATATTATTTTGTCACTTCAGGTGAGTATTAGTGA ACTTACATCCTAATCTTTTTTTTCCCTTCCTTTTTTACTGTAAATACCAATGGCCCTTGTACTTACTTAATTTTAGTTTA TATATATTAAAATGTTAGCCCAAAACATTTTTATTTTTTATTTACTTGTGTATGGTTTGCTTTTTGAATTGAATCTTTCA AATTTCAATTCCTGCAGAGTAAAAATGGTGGCTTCTCAGGGTGGGAGCCAGCAGGAGCTCCAGAATGGTTGGAGGTATCT TTCAACTCTTGTTTTTCATTAAAATTATTAGATAACTTTCTAATACCATTTATTTCTTAATTTTGATTTTGTCTTAAGCT TCAATGTCAATGATTTCAGATACTAAATCCCTCAGAATCTTACGAGGATATTGTGGTTGAACATGAATATGTTGAAATTA CTGGATCAGCAATTGAGGCATTAGTTTTGTTTAAGAAACTCTATCCAGAGCACAGGAAGAATGAAATAGAGAGTTCTATT GTAAATGCAGTTAAATTCATTGAGGATACACAAACTAGCAGTGGGTCATGGTATGGAAATTGGGGTGTTTGCTTCATTTA TGGGACCTATTTTGCTCTTGCTGGGCTCGCTGCAGCTGGAAAGAATTTCTCCAATTGCAGTGCCATTCGCAAAGCAGTAA ACTTTTTACTCACTACACAAAGAGAGAATGGTGGTTGGGGTGAAAGCTATCTATCATGCCCAAAAAAGGTTTCTAATTAG CATCAAGATTTATCAGTGTTTTATTTCTATATCTCATCAATAAAATTTTACCGCGTCAATTATAAAAACACCCATGTTTT TAATTGGCTCATTCATGTCTTTTTTATTTGTGATGACAAAATTTACTGGTGATACAGAAAAATGGGATACAAAGTCATAC AAAACAATTTCAACCTTGTTACTAGATGATTGTAAATTAGCTAGCCTTACTTAAAAATTAATAGAGATCTTATATTGATT CATCATAATGAGTTGGATAATGCAGAGATACATACCCCTTGAAGGAAACCAGTCAAATGTTGTTCAGACAGCATGGGCAT TGATGGGTCTAATTCATTCAGGCCAGGTTTACTTTGGGCTTTTTGTAATTGCCAAATATGAACACATGATTGTTAATCTT TTTGGGTTAAAAAATAATTTAACTACATTGACTTTATAATAATCATAAATCTTAGAAAATTTTAATAAATTAATTCTTAC TTTAATAATTCATATATATACAGGAGGAAAGGGACCCGACTCCACTTCATCATGCAGCAAAGTTTATCATTAATTCGCAA CTTGAAGATGGTGATTGGCCTCAACAGGTACCTATATCAAGCTTTTTAATTATGCTACTATATTTTTGTAAGATTTCAAT ATACTAATCACACGGTTTCAAATTGCGATTGCGGCCATGACCACAATTACATTTATGATGTTATTGTGGGAACTCTAAAG TATTTCATTTTGCACACGCATTTAAGGTTACAAACCACAATTTAAAACCGTACTACTAATTTATGTCATTCACAAAACTT ATAGTAATTCCGCAGTAGCAAACCAATTTGCTTAATCCGCCGACAAAACTTATAGTAATTTTCTTTTGTCAAAAGTTACA ATATGTTTGATTTCAAATGTTAAATTTCTAAAAACATTACATTGGCCTATTATTAATTAGATACGAAAGTGAACTAGTTC TGGAGTTGAGGATTTCTTTTGACAATTTACAAGTTTTGTTTCATGTTCAATTTATGGCAGGAAAGCACTGGAGTGTTCTT TAGGAACGGCATTTTGCATTATCCAATGTACAGAAACATTTTTCCCATGTGGGCTCTAGCTGAATATGGCAAGCGAGTTG GATTACCTTCACTTAAAGCCTAATTACATGAAAAGCAATAAGCATTTGGAAAACATTACAGGATAATGGGGTTTTGTTGG TTGTAACTTGTAATGAGTGTTTTTTGGCTGGGTTTTTGTTCAGGTTTGTTGGGGTTTGTTTGTCTTGTCCCGGTTTCTAT AGATCTTTATGATCTATTTGTGTTGGCCGGTTTGTATTCACTGCTTGACAGTGTTGCTCCCTATTCTCATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0537800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCACGTCATATTTCTAAAGGATCATGGACCTTCTCTAATCAGGACAATGGATGGCAAGTTTCTGATTGTACTGCAGT GAATTTGACGTGTTGCCTATTGTTATCAATGTTACCATCAGAGCTAGTTGGTGAAAAGATGGATGCTGAAAGGTTATTTG ATTCAATCAATATTATTTTGTCACTTCAGAGTAAAAATGGTGGCTTCTCAGGGTGGGAGCCAGCAGGAGCTCCAGAATGG TTGGAGATACTAAATCCCTCAGAATCTTACGAGGATATTGTGGTTGAACATGAATATGTTGAAATTACTGGATCAGCAAT TGAGGCATTAGTTTTGTTTAAGAAACTCTATCCAGAGCACAGGAAGAATGAAATAGAGAGTTCTATTGTAAATGCAGTTA AATTCATTGAGGATACACAAACTAGCAGTGGGTCATGGTATGGAAATTGGGGTGTTTGCTTCATTTATGGGACCTATTTT GCTCTTGCTGGGCTCGCTGCAGCTGGAAAGAATTTCTCCAATTGCAGTGCCATTCGCAAAGCAGTAAACTTTTTACTCAC TACACAAAGAGAGAATGGTGGTTGGGGTGAAAGCTATCTATCATGCCCAAAAAAGAGATACATACCCCTTGAAGGAAACC AGTCAAATGTTGTTCAGACAGCATGGGCATTGATGGGTCTAATTCATTCAGGCCAGGAGGAAAGGGACCCGACTCCACTT CATCATGCAGCAAAGTTTATCATTAATTCGCAACTTGAAGATGGTGATTGGCCTCAACAGGAAAGCACTGGAGTGTTCTT TAGGAACGGCATTTTGCATTATCCAATGTACAGAAACATTTTTCCCATGTGGGCTCTAGCTGAATATGGCAAGCGAGTTG GATTACCTTCACTTAAAGCCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0537800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRHISKGSWTFSNQDNGWQVSDCTAVNLTCCLLLSMLPSELVGEKMDAERLFDSINIILSLQSKNGGFSGWEPAGAPEW LEILNPSESYEDIVVEHEYVEITGSAIEALVLFKKLYPEHRKNEIESSIVNAVKFIEDTQTSSGSWYGNWGVCFIYGTYF ALAGLAAAGKNFSNCSAIRKAVNFLLTTQRENGGWGESYLSCPKKRYIPLEGNQSNVVQTAWALMGLIHSGQEERDPTPL HHAAKFIINSQLEDGDWPQQESTGVFFRNGILHYPMYRNIFPMWALAEYGKRVGLPSLKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11764:SF49
1 291 291 1.7E-149 –
PANTHER
PTHR11764
1 291 291 1.7E-149 –
TIGRFAM
TIGR01787
1 290 290 3.6E-110
IPR018333
Gene3D
G3DSA:1.50.10.20
2 289 288 3.6E-120 –
SUPERFAMILY
SSF48239
3 293 291 1.49E-91
IPR008930
Pfam
PF13243
4 289 286 4.7E-47
IPR032696
TMHMM
TMhelix
146 168 23 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000250
Molecular function Lanosterol synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = lanosterol. This is a cyclization reaction that forms the sterol nucleus.
Subterm of
GO:0005811
Cellular component Lipid droplet An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins.
Subterm of
GO:0016104
Biological process Triterpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.
Subterm of
GO:0016866
Molecular function Intramolecular transferase activity Catalysis of the transfer of a functional group from one position to another within a single molecule.
Subterm of
GO:0042300
Molecular function Beta-amyrin synthase activity Catalysis of the reaction: (S)-2,3-epoxysqualene = beta-amyrin. This reaction is the cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into beta-amyrin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0537800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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