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Lj0g3v0004189.1

Overview

Field Value
Gene ID Lj0g3v0004189
Transcript ID Lj0g3v0004189.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vacuolar protein sorting-associated protein 36-like [Cicer arietinum] gi|502158471|ref|XP_004511164.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13128
1 442 442 2.50E-164 –
PANTHER
PTHR13128:SF12
1 442 442 2.50E-164 –
SUPERFAMILY
SSF50729
5 127 123 2.21E-19
IPR011993
ProSiteProfiles
PS51495
9 153 145 10.642
IPR021648
Pfam
PF11605
11 102 92 2.00E-10
IPR021648
Pfam
PF04157
182 406 225 9.60E-41
IPR007286
Gene3D
G3DSA:1.10.10.10
274 349 76 4.80E-30
IPR011991
SUPERFAMILY
SSF46785
310 422 113 1.09E-25
IPR011991
Gene3D
G3DSA:1.10.10.10
350 422 73 1.30E-21
IPR011991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0032266
Molecular function Phosphatidylinositol-3-phosphate binding Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
Subterm of
GO:0043130
Molecular function Ubiquitin binding Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Subterm of

Genome browser

LORE1 insertions 44

Expression data

Expression pattern

Expression pattern of Lj0g3v0004189.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0004189.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.