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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011993
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 197 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.500s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004189.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 36-like [Cicer arietinum] gi|502158471|ref|XP_004511164.1| chr0 1455563 1460966 +
2 domain predictions
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Lj0g3v0014309.1
n.a. Non-intrinsic ABC protein 4 [Theobroma cacao] gi|508702515|gb|EOX94411.1| chr0 5487427 5490282 -
3 domain predictions
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Lj0g3v0046969.1
n.a. Pleckstrin (PH) domain-containing protein isoform 3, partial [Theobroma cacao] gi|508777778|gb|EOY25034.1| chr0 15669076 15672323 -
3 domain predictions
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Lj0g3v0101309.1
n.a. Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao] gi|508714943|gb|EOY06840.1| chr0 42954267 42968596 +
3 domain predictions
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Lj0g3v0101309.3
n.a. Calcium-dependent lipid-binding family protein isoform 2, partial [Theobroma cacao] gi|508714944|gb|EOY06841.1| chr0 42961642 42968596 +
3 domain predictions
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Lj0g3v0116189.1
n.a. PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1| chr0 51088942 51090930 +
2 domain predictions
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Lj0g3v0116199.1
n.a. PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1| chr0 51089853 51090930 +
2 domain predictions
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Lj0g3v0130899.1
n.a. Oxysterol-binding protein-related protein [Medicago truncatula] gi|357463185|ref|XP_003601874.1| chr0 59455762 59459004 -
3 domain predictions
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Lj0g3v0199559.2
n.a. PREDICTED: dynamin-2B-like [Glycine max] gi|356522123|ref|XP_003529699.1| chr0 97966111 97995708 -
3 domain predictions
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Lj0g3v0200189.1
n.a. PREDICTED: protein kinase PINOID 2-like [Cicer arietinum] gi|502088049|ref|XP_004488713.1| chr0 98716582 98718346 +
2 domain predictions
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Lj0g3v0201789.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356511534|ref|XP_003524480.1| chr0 99843316 99852202 +
3 domain predictions
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Lj0g3v0201789.2
n.a. ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|357520601|ref|XP_003630589.1| chr0 99843316 99847748 +
2 domain predictions
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Lj0g3v0235939.1
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like isoform 2 [Glycine max] gi|356552837|ref|XP_003544769.1| chr0 122281045 122282554 +
3 domain predictions
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Lj0g3v0246169.1
n.a. PREDICTED: brefeldin A resistance protein-like [Glycine max] gi|356556006|ref|XP_003546318.1| chr0 127507320 127510310 -
3 domain predictions
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Lj0g3v0273669.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502129267|ref|XP_004500244.1| chr0 141858601 141859568 +
3 domain predictions
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
3 domain predictions
 –
Lj0g3v0292439.1
n.a. oxysterol-binding protein [Glycine max] gi|351725709|ref|NP_001236590.1| chr0 151784710 151793991 -
3 domain predictions
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Lj0g3v0293959.1
n.a. PREDICTED: testis-expressed sequence 2 protein-like [Cicer arietinum] gi|502116553|ref|XP_004495486.1| chr0 152661369 152669606 -
2 domain predictions
 –
Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
3 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
3 domain predictions
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Lj0g3v0321199.1
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356545884|ref|XP_003541363.1| chr0 167681109 167690336 +
2 domain predictions
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Lj0g3v0322849.1
n.a. PREDICTED: phototropin-1-like [Glycine max] gi|356550222|ref|XP_003543487.1| chr0 168601536 168609765 +
2 domain predictions
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Lj0g3v0332269.2
n.a. PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1| chr0 173831127 173836206 -
3 domain predictions
 –
Lj1g3v1380900.3
n.a. PREDICTED: oxysterol-binding protein-related protein 1C-like [Cicer arietinum] gi|502137210|ref|XP_004503009.1| chr1 16684564 16692111 -
3 domain predictions
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Lj1g3v1442930.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD1-like [Cicer arietinum] gi|502133396|ref|XP_004501749.1| chr1 17388737 17391036 +
3 domain predictions
 –
Lj1g3v1442930.2
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD1-like [Cicer arietinum] gi|502133396|ref|XP_004501749.1| chr1 17388737 17392679 +
3 domain predictions
 –
Lj1g3v1548700.1
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18497830 -
2 domain predictions
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Lj1g3v1548700.3
n.a. PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum] gi|502133135|ref|XP_004501660.1| chr1 18464371 18501658 -
2 domain predictions
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Lj1g3v2195300.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26330797 +
3 domain predictions
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Lj1g3v2195300.2
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26331648 +
3 domain predictions
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Lj1g3v3137870.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356523716|ref|XP_003530481.1| chr1 35745154 35754140 +
3 domain predictions
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Lj1g3v3556890.1
n.a. PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1| chr1 40816588 40820377 +
2 domain predictions
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Lj1g3v3648630.1
n.a. PREDICTED: protein kinase PVPK-1-like [Glycine max] gi|356558847|ref|XP_003547714.1| chr1 42229159 42233353 +
2 domain predictions
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Lj1g3v3648630.2
n.a. PREDICTED: protein kinase PVPK-1-like [Glycine max] gi|356558847|ref|XP_003547714.1| chr1 42229159 42233353 +
2 domain predictions
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Lj1g3v4719680.1
n.a. PREDICTED: mRNA-decapping enzyme-like protein-like isoform X1 [Cicer arietinum] gi|502111997|ref|XP_004494216.1| chr1 56375170 56381043 +
3 domain predictions
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Lj2g3v0560040.1
n.a. PREDICTED: testis-expressed sequence 2 protein-like [Cicer arietinum] gi|502116553|ref|XP_004495486.1| chr2 7423452 7434532 +
2 domain predictions
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Lj2g3v0836910.1
n.a. PREDICTED: kinesin-like calmodulin-binding protein homolog [Glycine max] gi|356531307|ref|XP_003534219.1| chr2 13018688 13024712 +
2 domain predictions
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Lj2g3v0932660.1
n.a. PREDICTED: protein kinase PVPK-1-like [Cicer arietinum] gi|502090456|ref|XP_004489234.1| chr2 14737286 14741558 -
2 domain predictions
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Lj2g3v1034620.1
n.a. PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1| chr2 16549598 16554927 -
3 domain predictions
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Lj2g3v1572000.1
n.a. PREDICTED: kinesin-like calmodulin-binding protein homolog [Glycine max] gi|356540898|ref|XP_003538921.1| chr2 24979427 24986911 +
3 domain predictions
 –
Lj2g3v1988700.2
n.a. Pleckstrin (PH) domain-containing protein isoform 2 [Theobroma cacao] gi|508776870|gb|EOY24126.1| chr2 29485873 29533570 -
3 domain predictions
 –
Lj2g3v2014190.1
n.a. RanBP1 domain-containing protein [Medicago truncatula] gi|357481749|ref|XP_003611160.1| chr2 30719414 30722330 -
3 domain predictions
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Lj2g3v2736560.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502097376|ref|XP_004490979.1| chr2 36322884 36323852 -
3 domain predictions
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Lj2g3v2736570.1
n.a. PREDICTED: pleckstrin homology domain-containing protein 1-like [Cicer arietinum] gi|502097376|ref|XP_004490979.1| chr2 36323077 36323852 -
3 domain predictions
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Lj2g3v3022930.1
n.a. PREDICTED: platelet binding protein GspB-like isoform X1 [Cicer arietinum] gi|502098400|ref|XP_004491226.1| chr2 39102194 39115034 +
3 domain predictions
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Lj2g3v3022930.2
n.a. PREDICTED: platelet binding protein GspB-like isoform X2 [Cicer arietinum] gi|502098404|ref|XP_004491227.1| chr2 39102194 39113823 +
3 domain predictions
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Lj2g3v3055310.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357493985|ref|XP_003617281.1| chr2 39274464 39280024 +
3 domain predictions
 –
Lj2g3v3084310.1
n.a. PREDICTED: differentially expressed in FDCP 6 homolog [Cicer arietinum] gi|502098779|ref|XP_004491315.1| chr2 39645803 39651835 -
3 domain predictions
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Lj3g3v0139590.1
n.a. PREDICTED: brefeldin A resistance protein-like [Glycine max] gi|356556006|ref|XP_003546318.1| chr3 1115638 1118478 -
3 domain predictions
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Lj3g3v0462040.1
n.a. dynamin homolog [Astragalus sinicus] gi|6625788|gb|AAF19398.1|AF203882_1 chr3 5059703 5071377 -
3 domain predictions
 –