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Lj0g3v0004369.1

Overview

Field	Value
Gene ID	Lj0g3v0004369
Transcript ID	Lj0g3v0004369.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cicer arietinum] gi\|502153637\|ref\|XP_004509412.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21311:SF0 View details on PTHR21311:SF0 Search for proteins/transripts with this domain View external data on PTHR21311:SF0	1	458	458	7.10E-198	–
PANTHER	PTHR21311 View details on PTHR21311 Search for proteins/transripts with this domain View external data on PTHR21311	1	458	458	7.10E-198	IPR007255 Show description in modal box View details on IPR007255 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04124 View details on PF04124 Search for proteins/transripts with this domain View external data on PF04124	1	243	243	1.20E-108	IPR007255 Show description in modal box View details on IPR007255 Search for proteins/transripts with this domain View on EBI InterPro Service
PIRSF	PIRSF015415 View details on PIRSF015415 Search for proteins/transripts with this domain View external data on PIRSF015415	1	454	454	1.50E-178	IPR016632 Show description in modal box View details on IPR016632 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF74788 View details on SSF74788 Search for proteins/transripts with this domain View external data on SSF74788	10	227	218	2.09E-35	IPR016159 Show description in modal box View details on IPR016159 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	407	458	52	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0017119 View details of GO:0017119 AmiGO InterPro QuickGO	Cellular component	Golgi transport complex	A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8.	Subterm of View details of GO:0044431 View details of GO:0099023

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0004369.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0004369.1, powered by CORGI.

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