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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016159
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 108 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.937s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004369.1
n.a. PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cicer arietinum] gi|502153637|ref|XP_004509412.1| chr0 1564725 1569168 +
2 domain predictions
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Lj0g3v0078039.1
n.a. Exocyst complex component [Medicago truncatula] gi|357491281|ref|XP_003615928.1| chr0 30035861 30038560 +
2 domain predictions
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Lj0g3v0078049.1
n.a. Exocyst complex component [Medicago truncatula] gi|357491281|ref|XP_003615928.1| chr0 30035861 30038560 +
2 domain predictions
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Lj0g3v0083399.1
n.a. Exocyst complex component [Medicago truncatula] gi|357437557|ref|XP_003589054.1| chr0 33014826 33018224 -
2 domain predictions
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Lj0g3v0209709.1
n.a. PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| chr0 105211910 105220539 -
2 domain predictions
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Lj0g3v0209709.2
n.a. PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| chr0 105213137 105220539 -
2 domain predictions
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Lj0g3v0214899.1
n.a. PREDICTED: exocyst complex component 7-like [Glycine max] gi|356502247|ref|XP_003519931.1| chr0 108894474 108895889 -
2 domain predictions
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Lj0g3v0214909.1
n.a. PREDICTED: exocyst complex component 7-like [Glycine max] gi|356502247|ref|XP_003519931.1| chr0 108896046 108897151 -
2 domain predictions
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Lj0g3v0228939.1
n.a. PREDICTED: LOW QUALITY PROTEIN: exocyst complex component 8-like [Glycine max] gi|356497826|ref|XP_003517758.1| chr0 118437342 118439412 -
2 domain predictions
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Lj0g3v0237359.1
n.a. Cullin-like protein1 [Medicago truncatula] gi|357478781|ref|XP_003609676.1| chr0 123108689 123110919 +
2 domain predictions
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Lj0g3v0237359.2
n.a. PREDICTED: cullin-1-like isoform 1 [Solanum lycopersicum] gi|460366713|ref|XP_004229224.1| chr0 123108689 123110919 +
2 domain predictions
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Lj0g3v0291869.1
n.a. Exocyst complex component [Medicago truncatula] gi|357477099|ref|XP_003608835.1| chr0 151416183 151418734 -
2 domain predictions
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Lj0g3v0294369.1
n.a. Exocyst subunit exo70 family protein A2 isoform 2 [Theobroma cacao] gi|508716560|gb|EOY08457.1| chr0 152959136 152964832 +
2 domain predictions
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Lj0g3v0294369.2
n.a. PREDICTED: exocyst complex component 7-like isoform 1 [Glycine max] gi|356550590|ref|XP_003543668.1| chr0 152961630 152964832 +
2 domain predictions
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Lj0g3v0298809.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502118127|ref|XP_004496114.1| chr0 155280723 155285589 +
2 domain predictions
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Lj0g3v0305379.1
n.a. Exocyst complex component [Medicago truncatula] gi|357491191|ref|XP_003615883.1| chr0 159180031 159181077 +
2 domain predictions
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Lj0g3v0313429.1
n.a. Exocyst complex component [Medicago truncatula] gi|357472627|ref|XP_003606598.1| chr0 163657535 163659977 +
2 domain predictions
 –
Lj0g3v0363179.1
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr0 191546604 191549479 +
2 domain predictions
 –
Lj0g3v0363179.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr0 191546604 191549479 +
2 domain predictions
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Lj1g3v3022340.1
n.a. n.a. chr1 34372817 34375778 +
2 domain predictions
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Lj1g3v3891950.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502102704|ref|XP_004492158.1| chr1 44696313 44699341 -
2 domain predictions
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Lj1g3v4578460.1
n.a. Exocyst subunit exo70 family protein H4 [Theobroma cacao] gi|508715738|gb|EOY07635.1| chr1 54146152 54148402 +
2 domain predictions
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Lj1g3v4969950.1
n.a. Exocyst complex component [Medicago truncatula] gi|357454067|ref|XP_003597314.1| chr1 60569231 60570382 -
2 domain predictions
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Lj2g3v1056970.1
n.a. PREDICTED: cullin-3A-like [Glycine max] gi|356572514|ref|XP_003554413.1| chr2 16716927 16720538 +
2 domain predictions
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Lj2g3v1280050.1
n.a. PREDICTED: cullin-3A-like [Cicer arietinum] gi|502093740|ref|XP_004490037.1| chr2 20579790 20584421 -
2 domain predictions
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Lj2g3v1647670.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502096226|ref|XP_004490667.1| chr2 25662215 25663192 -
2 domain predictions
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Lj2g3v1659230.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502096226|ref|XP_004490667.1| chr2 25809121 25810931 -
2 domain predictions
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Lj2g3v2314840.1
n.a. n.a. chr2 33490301 33492967 +
2 domain predictions
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Lj2g3v2314840.2
n.a. n.a. chr2 33490301 33496590 +
2 domain predictions
 –
Lj2g3v2314850.1
n.a. Leucine zipper protein [Medicago truncatula] gi|357491217|ref|XP_003615896.1| chr2 33491538 33497316 -
2 domain predictions
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Lj2g3v2364680.1
n.a. Leucine zipper protein [Medicago truncatula] gi|357491253|ref|XP_003615914.1| chr2 33893450 33896140 +
2 domain predictions
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Lj2g3v2364680.2
n.a. Exocyst complex component [Medicago truncatula] gi|357491281|ref|XP_003615928.1| chr2 33893450 33896140 +
2 domain predictions
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Lj2g3v2364710.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502096226|ref|XP_004490667.1| chr2 33902681 33905337 -
2 domain predictions
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Lj3g3v2042240.1
n.a. PREDICTED: exocyst complex component 8 [Vitis vinifera] gi|225443280|ref|XP_002273667.1| chr3 26292580 26300519 -
2 domain predictions
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Lj3g3v2043280.1
n.a. PREDICTED: exocyst complex component 7-like [Vitis vinifera] gi|225429756|ref|XP_002280486.1| chr3 26315907 26321059 +
2 domain predictions
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Lj3g3v2576530.1
n.a. PREDICTED: exocyst complex component 7-like [Cicer arietinum] gi|502156542|ref|XP_004510526.1| chr3 31749694 31752823 +
2 domain predictions
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Lj3g3v2863540.1
n.a. Exocyst subunit exo70 family protein G1 [Theobroma cacao] gi|508781976|gb|EOY29232.1| chr3 35361450 35364646 +
2 domain predictions
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Lj4g3v0666960.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508780274|gb|EOY27530.1| chr4 10796934 10812261 -
2 domain predictions
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Lj4g3v1388270.1
n.a. Exocyst complex component [Medicago truncatula] gi|357477099|ref|XP_003608835.1| chr4 21283650 21286520 +
2 domain predictions
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Lj4g3v2215330.2
n.a. PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 3-like [Glycine max] gi|356565620|ref|XP_003551037.1| chr4 30666027 30676276 -
2 domain predictions
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Lj4g3v2365220.2
n.a. Cullin-like protein1 [Medicago truncatula] gi|357478711|ref|XP_003609641.1| chr4 32513136 32516011 +
2 domain predictions
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Lj4g3v2366270.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr4 32526892 32529650 +
2 domain predictions
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Lj4g3v2367300.2
n.a. PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| chr4 32553039 32557712 +
2 domain predictions
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Lj5g3v1118440.1
n.a. Uncharacterized protein TCM_003954 [Theobroma cacao] gi|508702467|gb|EOX94363.1| chr5 17896816 17900156 +
2 domain predictions
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Lj5g3v1697800.1
n.a. Exocyst complex component EXO70 [Medicago truncatula] gi|357442821|ref|XP_003591688.1| chr5 24401965 24416086 +
2 domain predictions
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Lj5g3v1697800.2
n.a. Exocyst complex component EXO70 [Medicago truncatula] gi|357442821|ref|XP_003591688.1| chr5 24414747 24416086 +
2 domain predictions
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Lj5g3v1865580.1
n.a. PREDICTED: exocyst complex component 2-like isoform X1 [Cicer arietinum] gi|502118702|ref|XP_004496373.1| chr5 26601033 26615303 +
2 domain predictions
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Lj6g3v1946230.1
n.a. PREDICTED: cullin-4-like [Glycine max] gi|356555528|ref|XP_003546083.1| chr6 22131283 22138570 +
2 domain predictions
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LotjaGi1g1v0112400.1
n.a. Exocyst complex component, putative; TAIR: AT5G58430.1 exocyst subunit exo70 family protein B1; Swiss-Prot: sp|Q9FGH9|E70B1_ARATH Exocyst complex component EXO70B1; TrEMBL-Plants: tr|A0A0R0GS25|A0A0R0GS25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0112400 LjG1.1_chr1 17602174 17604757 +
2 domain predictions
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LotjaGi1g1v0112500.1
n.a. Exocyst complex component, putative; TAIR: AT5G58430.1 exocyst subunit exo70 family protein B1; Swiss-Prot: sp|Q9FGH9|E70B1_ARATH Exocyst complex component EXO70B1; TrEMBL-Plants: tr|A0A0B2QH88|A0A0B2QH88_GLYSO Exocyst complex component 7; Found in the gene: LotjaGi1g1v0112500 LjG1.1_chr1 17614911 17617136 +
2 domain predictions
 –