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Lj0g3v0004499.1

Overview

Field	Value
Gene ID	Lj0g3v0004499
Transcript ID	Lj0g3v0004499.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: peroxisome biogenesis protein 16-like [Cicer arietinum] gi\|502157478\|ref\|XP_004510890.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13299:SF0 View details on PTHR13299:SF0 Search for proteins/transripts with this domain View external data on PTHR13299:SF0	1	367	367	1.80E-126	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	233	233	–	–
PANTHER	PTHR13299 View details on PTHR13299 Search for proteins/transripts with this domain View external data on PTHR13299	1	367	367	1.80E-126	–
Pfam	PF08610 View details on PF08610 Search for proteins/transripts with this domain View external data on PF08610	2	358	357	2.60E-74	IPR013919 Show description in modal box View details on IPR013919 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	139	169	31	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	232	254	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	234	254	21	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	255	265	11	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	266	288	23	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	266	288	23	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	289	367	79	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0004499.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0004499.1, powered by CORGI.

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