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Lj0g3v0043209.1

Overview

Field Value
Gene ID Lj0g3v0043209
Transcript ID Lj0g3v0043209.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Glycine max] gi|356540203|ref|XP_003538579.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 94 94 – –
PANTHER
PTHR34790
1 205 205 2.00E-77 –
PANTHER
PTHR34790:SF1
1 205 205 2.00E-77 –
TMHMM
TMhelix
63 85 23 – –
Hamap
MF_00717
91 125 35 10.886
IPR009388
Pfam
PF06298
91 123 33 2.80E-14
IPR009388
Phobius
TRANSMEMBRANE
95 117 23 – –
TMHMM
TMhelix
95 117 23 – –
Phobius
CYTOPLASMIC_DOMAIN
118 128 11 – –
Phobius
TRANSMEMBRANE
129 149 21 – –
TMHMM
TMhelix
130 149 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
150 174 25 – –
Pfam
PF06298
170 202 33 5.80E-12
IPR009388
Phobius
TRANSMEMBRANE
175 196 22 – –
TMHMM
TMhelix
175 192 18 – –
Phobius
CYTOPLASMIC_DOMAIN
197 205 9 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009523
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Subterm of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0043209.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0043209.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.