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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0054079 |
| Transcript ID | Lj0g3v0054079.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | photosystem II CP43 protein [Saxifraga rivularis] gi|300079152|gb|ADJ67447.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | – | – | |
| PANTHER | 1 | 78 | 78 | 2.30E-57 | – | |
| PANTHER | 1 | 78 | 78 | 2.30E-57 | – | |
| SUPERFAMILY | 1 | 77 | 77 | 1.44E-26 | ||
| Pfam | 1 | 74 | 74 | 1.40E-27 | ||
| Phobius | 30 | 48 | 19 | – | – | |
| TMHMM | 31 | 50 | 20 | – | – | |
| Phobius | 49 | 78 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem | A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species. | ||
| Biological process | Photosynthetic electron transport chain | A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Chlorophyll binding | Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. | ||
| Biological process | Photosynthesis, light reaction | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. |
Expression pattern of Lj0g3v0054079.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0054079.1, powered by CORGI.
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