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Lj0g3v0059869.1

Overview

Field Value
Gene ID Lj0g3v0059869
Transcript ID Lj0g3v0059869.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 81 81 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 19 19 – –
PANTHER
PTHR24006:SF466
86 204 119 1.20E-36 –
PANTHER
PTHR24006
86 204 119 1.20E-36 –
Gene3D
G3DSA:3.80.10.10
90 354 265 4.60E-26
IPR032675
TIGRFAM
TIGR02167
93 108 16 3.20E-04
IPR011889
SUPERFAMILY
SSF52047
127 354 228 2.55E-19 –
SMART
SM00367
156 187 32 59
IPR006553
PANTHER
PTHR24006
221 347 127 1.20E-36 –
PANTHER
PTHR24006:SF466
221 347 127 1.20E-36 –
SMART
SM00367
286 311 26 0.0063
IPR006553
SMART
SM00367
312 337 26 19
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj0g3v0059869.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0059869.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.