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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006553
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 129 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.178s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0011599.1
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502137920|ref|XP_004503230.1| chr0 4487266 4490775 +
2 domain predictions
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Lj0g3v0047169.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr0 15725631 15726824 -
2 domain predictions
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Lj0g3v0059759.1
n.a. PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1| chr0 19823224 19823890 +
2 domain predictions
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Lj0g3v0059869.1
n.a. PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1| chr0 19856695 19859450 +
2 domain predictions
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Lj0g3v0059909.1
n.a. PREDICTED: F-box protein ORE9-like [Glycine max] gi|356545100|ref|XP_003540983.1| chr0 19885429 19888612 +
2 domain predictions
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Lj0g3v0065659.1
n.a. Cyclin-like F-box [Medicago truncatula] gi|124359880|gb|ABD32480.2| chr0 22888622 22889518 +
2 domain predictions
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Lj0g3v0073339.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] gi|356507724|ref|XP_003522614.1| chr0 27484178 27487669 -
2 domain predictions
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Lj0g3v0086869.2
n.a. PREDICTED: F-box protein At-B-like [Glycine max] gi|356522300|ref|XP_003529785.1| chr0 35135538 35138045 +
2 domain predictions
 –
Lj0g3v0127549.1
n.a. PREDICTED: F-box/LRR-repeat protein 4-like [Cicer arietinum] gi|502166912|ref|XP_004514011.1| chr0 57531772 57533693 +
2 domain predictions
 –
Lj0g3v0200139.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357468013|ref|XP_003604291.1| chr0 98666554 98669005 +
2 domain predictions
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Lj0g3v0208289.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Cicer arietinum] gi|502147553|ref|XP_004506828.1| chr0 104304981 104310831 +
2 domain predictions
 –
Lj0g3v0208289.2
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356506506|ref|XP_003522022.1| chr0 104304981 104310831 +
2 domain predictions
 –
Lj0g3v0234639.1
n.a. n.a. chr0 121572291 121573262 +
2 domain predictions
 –
Lj0g3v0237499.1
n.a. PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] gi|356552386|ref|XP_003544549.1| chr0 123147536 123157907 -
2 domain predictions
 –
Lj0g3v0248789.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Glycine max] gi|356568604|ref|XP_003552500.1| chr0 128931432 128934505 +
2 domain predictions
 –
Lj0g3v0274899.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357447213|ref|XP_003593882.1| chr0 142542401 142544858 +
2 domain predictions
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Lj1g3v0013170.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like isoform 2 [Glycine max] gi|356552521|ref|XP_003544615.1| chr1 80320 80738 -
2 domain predictions
 –
Lj1g3v0013210.1
n.a. Ein3-binding f-box protein [Medicago truncatula] gi|357436981|ref|XP_003588766.1| chr1 82587 83274 -
2 domain predictions
 –
Lj1g3v0244630.2
n.a. F-box family protein [Medicago truncatula] gi|357489889|ref|XP_003615232.1| chr1 2408912 2410072 +
2 domain predictions
 –
Lj1g3v3556950.1
n.a. PREDICTED: DNA repair protein rhp7-like [Glycine max] gi|356565796|ref|XP_003551123.1| chr1 40833637 40837443 +
2 domain predictions
 –
Lj1g3v4139550.1
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
 –
Lj1g3v4139550.2
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
 –
Lj1g3v4139550.3
n.a. PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] gi|502097266|ref|XP_004490952.1| chr1 49077128 49081303 -
2 domain predictions
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Lj1g3v4764980.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356572671|ref|XP_003554490.1| chr1 57437725 57441080 +
2 domain predictions
 –
Lj1g3v4918600.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356505803|ref|XP_003521679.1| chr1 59655230 59659471 +
2 domain predictions
 –
Lj2g3v1536320.1
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr2 24188368 24198454 -
2 domain predictions
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Lj2g3v1536330.2
n.a. NB-LRR type disease resistance protein Rps1-k-2 [Medicago truncatula] gi|357457003|ref|XP_003598782.1| chr2 24188607 24202153 -
2 domain predictions
 –
Lj2g3v1717610.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357439753|ref|XP_003590154.1| chr2 26432083 26436404 -
2 domain predictions
 –
Lj2g3v1890920.1
n.a. F-box protein [Medicago truncatula] gi|357482823|ref|XP_003611698.1| chr2 28100082 28101879 +
2 domain predictions
 –
Lj2g3v2088480.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr2 31586032 31588004 -
2 domain predictions
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Lj3g3v0018540.1
n.a. PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max] gi|356557231|ref|XP_003546921.1| chr3 366134 368251 -
2 domain predictions
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Lj3g3v0044100.1
n.a. PREDICTED: internalin-A-like isoform X2 [Cicer arietinum] gi|502147908|ref|XP_004506963.1| chr3 509226 516712 -
2 domain predictions
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Lj3g3v1393590.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356506506|ref|XP_003522022.1| chr3 17752088 17756745 -
2 domain predictions
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Lj3g3v2172690.2
n.a. PREDICTED: internalin-A-like isoform X1 [Cicer arietinum] gi|502147905|ref|XP_004506962.1| chr3 26998491 27006934 -
2 domain predictions
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Lj3g3v2387590.1
n.a. PREDICTED: F-box/LRR-repeat protein 12-like isoform X1 [Cicer arietinum] gi|502156988|ref|XP_004510720.1| chr3 29699906 29701036 +
2 domain predictions
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Lj3g3v3724410.1
n.a. PREDICTED: F-box protein At5g07670-like [Cicer arietinum] gi|502168974|ref|XP_004514507.1| chr3 45024760 45027823 -
2 domain predictions
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Lj4g3v0445480.1
n.a. PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356527933|ref|XP_003532560.1| chr4 5849502 5854005 -
2 domain predictions
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Lj4g3v0816700.1
n.a. PREDICTED: F-box protein SKIP2-like [Glycine max] gi|356514260|ref|XP_003525824.1| chr4 12695014 12697112 +
2 domain predictions
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Lj4g3v1199760.1
n.a. PREDICTED: BTB/POZ domain-containing protein FBL11-like [Cicer arietinum] gi|502111742|ref|XP_004494153.1| chr4 17553844 17562403 +
2 domain predictions
 –
Lj4g3v1199760.2
n.a. PREDICTED: BTB/POZ domain-containing protein FBL11-like [Cicer arietinum] gi|502111742|ref|XP_004494153.1| chr4 17553844 17562403 +
2 domain predictions
 –
Lj4g3v1597060.1
n.a. n.a. chr4 23430230 23431693 +
2 domain predictions
 –
Lj4g3v1880660.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] gi|356548573|ref|XP_003542675.1| chr4 26092553 26095968 +
2 domain predictions
 –
Lj4g3v1947730.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357478391|ref|XP_003609481.1| chr4 27266156 27274106 +
2 domain predictions
 –
Lj4g3v1947730.2
n.a. PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max] gi|356548547|ref|XP_003542662.1| chr4 27266156 27276269 +
2 domain predictions
 –
Lj4g3v1986770.1
n.a. F-box protein SKIP1 [Medicago truncatula] gi|357480017|ref|XP_003610294.1| chr4 27733403 27734983 +
2 domain predictions
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Lj4g3v1987840.1
n.a. F-box protein SKIP1 [Medicago truncatula] gi|357480017|ref|XP_003610294.1| chr4 27750459 27751705 -
2 domain predictions
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Lj4g3v2191490.1
n.a. PREDICTED: DNA repair protein rhp7-like [Glycine max] gi|356565796|ref|XP_003551123.1| chr4 30258643 30260475 +
2 domain predictions
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Lj4g3v3003880.1
n.a. PREDICTED: toll-like receptor 13-like isoform X2 [Cicer arietinum] gi|502139050|ref|XP_004503628.1| chr4 39818294 39822617 +
2 domain predictions
 –
Lj5g3v0294900.1
n.a. n.a. chr5 2645191 2648901 +
2 domain predictions
 –
Lj5g3v0369960.1
n.a. PREDICTED: F-box protein SKP2A-like [Cicer arietinum] gi|502136121|ref|XP_004502567.1| chr5 3465866 3468999 +
2 domain predictions
 –