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Lj0g3v0086279.1

Overview

Field Value
Gene ID Lj0g3v0086279
Transcript ID Lj0g3v0086279.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing protein Os11g0197600-like [Vitis vinifera] gi|359480431|ref|XP_002269140.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM01019
11 104 94 0.45
IPR003340
SUPERFAMILY
SSF101936
15 104 90 1.96E-05
IPR015300
Gene3D
G3DSA:2.40.330.10
18 104 87 2.40E-05
IPR015300
Coils
Coil
125 145 21 – –
SUPERFAMILY
SSF101936
158 257 100 1.37E-10
IPR015300
SMART
SM01019
163 264 102 0.0032
IPR003340
CDD
cd10017
163 260 98 5.70E-07
IPR003340
Gene3D
G3DSA:2.40.330.10
163 264 102 2.30E-09
IPR015300

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0086279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0086279.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.