Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0087429.1

Overview

Field	Value
Gene ID	Lj0g3v0087429
Transcript ID	Lj0g3v0087429.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: probable inactive serine/threonine-protein kinase bub1-like [Cicer arietinum] gi\|502130042\|ref\|XP_004500510.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14030:SF2 View details on PTHR14030:SF2 Search for proteins/transripts with this domain View external data on PTHR14030:SF2	1	522	522	2.00E-250	–
PANTHER	PTHR14030 View details on PTHR14030 Search for proteins/transripts with this domain View external data on PTHR14030	1	522	522	2.00E-250	IPR015661 Show description in modal box View details on IPR015661 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00777 View details on SM00777 Search for proteins/transripts with this domain View external data on SM00777	4	128	125	3.20E-44	IPR013212 Show description in modal box View details on IPR013212 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08311 View details on PF08311 Search for proteins/transripts with this domain View external data on PF08311	10	128	119	8.80E-34	IPR013212 Show description in modal box View details on IPR013212 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51489 View details on PS51489 Search for proteins/transripts with this domain View external data on PS51489	11	167	157	45.311	IPR013212 Show description in modal box View details on IPR013212 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	135	155	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	153	181	29	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	445	512	68	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0007094 View details of GO:0007094 AmiGO InterPro QuickGO	Biological process	Mitotic spindle assembly checkpoint	A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.	Subterm of View details of GO:0071173 View details of GO:0071174

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0087429.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0087429.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.