Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0107339.2

Overview

Field Value
Gene ID Lj0g3v0107339
Transcript ID Lj0g3v0107339.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PAF1 complex component [Populus trichocarpa] gi|224121454|ref|XP_002318586.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 60 60 – –
PANTHER
PTHR23146
8 311 304 1.50E-133 –
PANTHER
PTHR23146:SF0
8 311 304 1.50E-133 –
Pfam
PF04004
79 238 160 2.50E-48
IPR007149
MobiDBLite
mobidb-lite
270 408 139 – –
Coils
Coil
300 320 21 – –
PANTHER
PTHR23146
336 401 66 1.50E-133 –
PANTHER
PTHR23146:SF0
336 401 66 1.50E-133 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006368
Biological process Transcription elongation from RNA polymerase II promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
Subterm of
Part of
GO:0016570
Biological process Histone modification The covalent alteration of one or more amino acid residues within a histone protein.
Subterm of
GO:0016593
Cellular component Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
Subterm of
Part of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0107339.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0107339.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.