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Lj0g3v0112049.1

Overview

Field Value
Gene ID Lj0g3v0112049
Transcript ID Lj0g3v0112049.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Cicer arietinum] gi|502125889|ref|XP_004499104.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31391:SF17
1 440 440 2.50E-157 –
PANTHER
PTHR31391
1 440 440 2.50E-157 –
SUPERFAMILY
SSF101936
21 114 94 1.45E-21
IPR015300
ProSiteProfiles
PS50863
23 116 94 15.806
IPR003340
Gene3D
G3DSA:2.40.330.10
25 114 90 2.60E-22
IPR015300
SMART
SM01019
26 116 91 2.70E-16
IPR003340
Pfam
PF02362
36 112 77 9.60E-16
IPR003340
CDD
cd10017
38 114 77 2.39E-20
IPR003340
MobiDBLite
mobidb-lite
136 170 35 – –
MobiDBLite
mobidb-lite
217 295 79 – –
SUPERFAMILY
SSF101936
345 435 91 1.77E-13
IPR015300
Gene3D
G3DSA:2.40.330.10
346 430 85 2.30E-14
IPR015300
ProSiteProfiles
PS50863
346 440 95 9.516
IPR003340
SMART
SM01019
346 439 94 7.40E-06
IPR003340
Pfam
PF02362
347 437 91 1.80E-10
IPR003340
CDD
cd10017
349 438 90 1.41E-15
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 26

Expression data

Expression pattern

Expression pattern of Lj0g3v0112049.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0112049.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.