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Lj0g3v0113379.1

Overview

Field Value
Gene ID Lj0g3v0113379
Transcript ID Lj0g3v0113379.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description 14-3-3-like protein [Pisum sativum] gi|4850247|emb|CAB42546.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18860
1 249 249 3.30E-154
IPR000308
PIRSF
PIRSF000868
2 249 248 5.30E-104
IPR000308
Gene3D
G3DSA:1.20.190.20
6 240 235 1.70E-105 –
SUPERFAMILY
SSF48445
7 242 236 2.62E-95
IPR023410
SMART
SM00101
8 249 242 7.00E-158
IPR023410
Pfam
PF00244
14 240 227 1.10E-94
IPR023410
Coils
Coil
14 34 21 – –
PRINTS
PR00305
44 73 30 8.70E-82
IPR000308
ProSitePatterns
PS00796
50 60 11 –
IPR023409
PRINTS
PR00305
93 117 25 8.70E-82
IPR000308
PRINTS
PR00305
124 146 23 8.70E-82
IPR000308
PRINTS
PR00305
159 185 27 8.70E-82
IPR000308
PRINTS
PR00305
186 212 27 8.70E-82
IPR000308
PRINTS
PR00305
213 242 30 8.70E-82
IPR000308
ProSitePatterns
PS00797
222 241 20 –
IPR023409

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0113379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0113379.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.