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Lj0g3v0114559.1

Overview

Field Value
Gene ID Lj0g3v0114559
Transcript ID Lj0g3v0114559.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] gi|502123723|ref|XP_004498233.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF101936
2 95 94 1.73E-17
IPR015300
Gene3D
G3DSA:2.40.330.10
4 93 90 6.50E-16
IPR015300
CDD
cd10017
4 93 90 1.93E-13
IPR003340
ProSiteProfiles
PS50863
4 95 92 8.36
IPR003340
PANTHER
PTHR31674:SF1
5 153 149 1.60E-52 –
PANTHER
PTHR31674
5 153 149 1.60E-52 –
SMART
SM01019
6 95 90 6.80E-07
IPR003340
Pfam
PF02362
6 93 88 7.00E-10
IPR003340
MobiDBLite
mobidb-lite
117 157 41 – –
Gene3D
G3DSA:2.40.330.10
199 300 102 1.80E-17
IPR015300
SUPERFAMILY
SSF101936
199 301 103 1.71E-17
IPR015300
PANTHER
PTHR31674:SF1
200 296 97 1.60E-52 –
PANTHER
PTHR31674
200 296 97 1.60E-52 –
CDD
cd10017
204 300 97 2.77E-15
IPR003340
Pfam
PF02362
205 300 96 5.20E-14
IPR003340
SMART
SM01019
205 304 100 2.30E-06
IPR003340
ProSiteProfiles
PS50863
205 304 100 13.747
IPR003340
SMART
SM01019
355 424 70 0.78
IPR003340
SUPERFAMILY
SSF101936
363 423 61 2.35E-07
IPR015300
Gene3D
G3DSA:2.40.330.10
381 424 44 5.80E-06
IPR015300
ProSiteProfiles
PS50863
385 424 40 7.26
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0114559.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0114559.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.