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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0128359 |
| Transcript ID | Lj0g3v0128359.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger protein VAR3, chloroplastic-like [Glycine max] gi|356531152|ref|XP_003534142.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 6 | 16 | 11 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 390 | 369 | – | – | |
| PANTHER | 70 | 389 | 320 | 9.70E-175 | – | |
| PANTHER | 70 | 389 | 320 | 9.70E-175 | – | |
| Coils | 140 | 160 | 21 | – | – | |
| SUPERFAMILY | 268 | 303 | 36 | 1.65E-06 | ||
| Gene3D | 268 | 302 | 35 | 5.10E-12 | ||
| Pfam | 273 | 301 | 29 | 3.80E-06 | ||
| ProSiteProfiles | 273 | 302 | 30 | 10.207 | ||
| SMART | 275 | 299 | 25 | 1.70E-04 | ||
| ProSitePatterns | 277 | 296 | 20 | – | ||
| SUPERFAMILY | 307 | 339 | 33 | 1.44E-06 | ||
| Gene3D | 307 | 342 | 36 | 7.50E-14 | ||
| ProSiteProfiles | 312 | 341 | 30 | 9.721 | ||
| Pfam | 312 | 340 | 29 | 3.00E-06 | ||
| SMART | 314 | 338 | 25 | 4.90E-07 | ||
| ProSitePatterns | 316 | 335 | 20 | – | ||
| Gene3D | 347 | 380 | 34 | 4.90E-12 | ||
| SUPERFAMILY | 349 | 381 | 33 | 2.43E-06 | ||
| Pfam | 351 | 379 | 29 | 1.10E-07 | ||
| ProSiteProfiles | 351 | 380 | 30 | 10.771 | ||
| SMART | 353 | 377 | 25 | 4.00E-05 | ||
| ProSitePatterns | 355 | 374 | 20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj0g3v0128359.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0128359.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.