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Lj0g3v0128639.1

Overview

Field Value
Gene ID Lj0g3v0128639
Transcript ID Lj0g3v0128639.1
Lotus japonicus genome version MG20 v3.0
Description Auxin-induced protein 5NG4 [Medicago truncatula] gi|357445673|ref|XP_003593114.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
SUPERFAMILY
SSF103481
5 64 60 1.14E-05 –
PANTHER
PTHR31218:SF7
7 65 59 9.50E-23 –
PANTHER
PTHR31218
7 65 59 9.50E-23
IPR030184
Pfam
PF00892
10 64 55 1.20E-07
IPR000620
Phobius
TRANSMEMBRANE
12 31 20 – –
TMHMM
TMhelix
13 32 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
32 36 5 – –
Phobius
TRANSMEMBRANE
37 64 28 – –
TMHMM
TMhelix
42 64 23 – –
Phobius
CYTOPLASMIC_DOMAIN
65 65 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0128639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0128639.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.