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Lj0g3v0165079.1

Overview

Field	Value
Gene ID	Lj0g3v0165079
Transcript ID	Lj0g3v0165079.1
Lotus japonicus genome version	MG20 v3.0
Description	Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 [Theobroma cacao] gi\|508704869\|gb\|EOX96765.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	32	32	–	–
PANTHER	PTHR33432 View details on PTHR33432 Search for proteins/transripts with this domain View external data on PTHR33432	2	431	430	2.30E-302	IPR033485 Show description in modal box View details on IPR033485 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR33432:SF5 View details on PTHR33432:SF5 Search for proteins/transripts with this domain View external data on PTHR33432:SF5	2	431	430	2.30E-302	–
SUPERFAMILY	SSF158639 View details on SSF158639 Search for proteins/transripts with this domain View external data on SSF158639	46	163	118	1.70E-38	IPR005491 Show description in modal box View details on IPR005491 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51138 View details on PS51138 Search for proteins/transripts with this domain View external data on PS51138	51	138	88	23.785	IPR005491 Show description in modal box View details on IPR005491 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01191 View details on SM01191 Search for proteins/transripts with this domain View external data on SM01191	51	124	74	7.50E-36	IPR005491 Show description in modal box View details on IPR005491 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03735 View details on PF03735 Search for proteins/transripts with this domain View external data on PF03735	53	121	69	6.30E-29	IPR005491 Show description in modal box View details on IPR005491 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	85	105	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	122	225	104	–	–
SUPERFAMILY	SSF63748 View details on SSF63748 Search for proteins/transripts with this domain View external data on SSF63748	242	282	41	9.78E-08	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	313	359	47	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	389	409	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	415	434	20	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0050832 View details of GO:0050832 AmiGO InterPro QuickGO	Biological process	Defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.	Subterm of View details of GO:0009620 View details of GO:0098542

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj0g3v0165079.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0165079.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.