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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005491
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.500s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0165079.1
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 [Theobroma cacao] gi|508704869|gb|EOX96765.1| chr0 78285767 78290717 -
5 domain predictions
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Lj1g3v3891790.1
n.a. ENT domain containing protein [Zea mays] gi|195625544|gb|ACG34602.1| chr1 44634032 44634664 -
4 domain predictions
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Lj1g3v3979360.1
n.a. ENT domain containing protein [Medicago truncatula] gi|357508851|ref|XP_003624714.1| chr1 47321198 47324640 +
5 domain predictions
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Lj3g3v0463710.3
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 [Theobroma cacao] gi|508704869|gb|EOX96765.1| chr3 5343905 5349730 -
5 domain predictions
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Lj4g3v1844680.1
n.a. RNA binding protein [Medicago truncatula] gi|357477933|ref|XP_003609252.1| chr4 25650215 25652783 -
2 domain predictions
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Lj5g3v0920960.1
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 2 [Theobroma cacao] gi|508717577|gb|EOY09474.1| chr5 13577907 13588683 +
5 domain predictions
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Lj5g3v0920960.2
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 2 [Theobroma cacao] gi|508717577|gb|EOY09474.1| chr5 13577907 13588683 +
5 domain predictions
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Lj5g3v2300380.1
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 3 [Theobroma cacao] gi|508785212|gb|EOY32468.1| chr5 34022417 34029896 -
5 domain predictions
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Lj5g3v2300380.3
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 4 [Theobroma cacao] gi|508785213|gb|EOY32469.1| chr5 34024275 34029896 -
5 domain predictions
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Lj6g3v1106080.1
n.a. Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1 [Theobroma cacao] gi|508704869|gb|EOX96765.1| chr6 13767110 13773142 +
5 domain predictions
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LotjaGi1g1v0386200.1
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959035 86965341 +
4 domain predictions
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LotjaGi1g1v0386200.4
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959038 86964819 +
4 domain predictions
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LotjaGi1g1v0648300.1
n.a. Protein EMSY; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|A0A151T9Z7|A0A151T9Z7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0648300 LjG1.1_chr1 120607353 120613962 +
4 domain predictions
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LotjaGi3g1v0057000.1
n.a. Emsy N terminus domain-containing family protein; TAIR: AT2G44440.1 Emsy N Terminus (ENT) domain-containing protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1LVG3|I1LVG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0057000 LjG1.1_chr3 5927318 5933804 -
4 domain predictions
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LotjaGi3g1v0125800.1
n.a. Emsy N terminus domain-containing family protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|G7IJ02|G7IJ02_MEDTR Emsy amine-terminus (ENT)/plant tudor-like domain protein; Found in the gene: LotjaGi3g1v0125800 LjG1.1_chr3 15391268 15398359 +
4 domain predictions
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LotjaGi3g1v0126000.1
n.a. Emsy N terminus domain-containing family protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|A0A072VJ16|A0A072VJ16_MEDTR Emsy amine-terminus (ENT)/plant tudor-like domain protein; Found in the gene: LotjaGi3g1v0126000 LjG1.1_chr3 15430737 15437898 +
4 domain predictions
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LotjaGi3g1v0126000.2
n.a. Emsy N terminus domain-containing family protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|G7IJ02|G7IJ02_MEDTR Emsy amine-terminus (ENT)/plant tudor-like domain protein; Found in the gene: LotjaGi3g1v0126000 LjG1.1_chr3 15430783 15437698 +
4 domain predictions
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LotjaGi4g1v0267300.1
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q9C7C4|EML1_ARATH Protein EMSY-LIKE 1; TrEMBL-Plants: tr|K7ML77|K7ML77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0267300 LjG1.1_chr4 63255950 63262787 -
4 domain predictions
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LotjaGi4g1v0267300.2
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q9C7C4|EML1_ARATH Protein EMSY-LIKE 1; TrEMBL-Plants: tr|K7ML77|K7ML77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0267300 LjG1.1_chr4 63256093 63262695 -
4 domain predictions
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LotjaGi4g1v0267300.4
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q9C7C4|EML1_ARATH Protein EMSY-LIKE 1; TrEMBL-Plants: tr|K7ML77|K7ML77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0267300 LjG1.1_chr4 63258236 63262673 -
4 domain predictions
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LotjaGi4g1v0267300.5
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q9C7C4|EML1_ARATH Protein EMSY-LIKE 1; TrEMBL-Plants: tr|K7ML77|K7ML77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0267300 LjG1.1_chr4 63259403 63262599 -
4 domain predictions
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LotjaGi5g1v0141300.1
n.a. Emsy N terminus domain-containing family protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|I1L2N1|I1L2N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0141300 LjG1.1_chr5 34835974 34850033 -
4 domain predictions
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LotjaGi5g1v0141300.2
n.a. Emsy N terminus domain-containing family protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|A0A151SGK0|A0A151SGK0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0141300 LjG1.1_chr5 34839725 34846953 -
4 domain predictions
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LotjaGi5g1v0141300.3
n.a. Emsy N terminus domain-containing protein; TAIR: AT5G13020.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; Swiss-Prot: sp|F4K2F0|EML3_ARATH Protein EMSY-LIKE 3; TrEMBL-Plants: tr|A0A151SGK0|A0A151SGK0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0141300 LjG1.1_chr5 34839725 34846953 -
4 domain predictions
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LotjaGi6g1v0214400.1
n.a. Emsy N terminus domain-containing family protein; TAIR: AT2G44440.1 Emsy N Terminus (ENT) domain-containing protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|A0A072VJ16|A0A072VJ16_MEDTR Emsy amine-terminus (ENT)/plant tudor-like domain protein; Found in the gene: LotjaGi6g1v0214400 LjG1.1_chr6 51349367 51365725 +
4 domain predictions
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