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Lj0g3v0166949.1

Overview

Field Value
Gene ID Lj0g3v0166949
Transcript ID Lj0g3v0166949.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein JACKDAW-like [Glycine max] gi|356541292|ref|XP_003539112.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 54 54 – –
PANTHER
PTHR10593:SF51
1 372 372 2.70E-186 –
PANTHER
PTHR10593
1 372 372 2.70E-186 –
SUPERFAMILY
SSF57667
69 92 24 6.40E-07 –
Gene3D
G3DSA:3.30.160.60
69 92 24 2.30E-05
IPR013087
SMART
SM00355
70 92 23 0.11
IPR015880
ProSiteProfiles
PS50157
70 92 23 10.824
IPR007087
ProSitePatterns
PS00028
72 92 21 –
IPR007087
SMART
SM00355
112 142 31 100
IPR015880
Gene3D
G3DSA:3.30.160.60
135 168 34 5.50E-04
IPR013087
SUPERFAMILY
SSF57667
142 167 26 6.40E-07 –
SMART
SM00355
147 167 21 140
IPR015880
PANTHER
PTHR10593
391 495 105 2.70E-186 –
PANTHER
PTHR10593:SF51
391 495 105 2.70E-186 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0166949.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0166949.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.