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Lj0g3v0169309.1

Overview

Field	Value
Gene ID	Lj0g3v0169309
Transcript ID	Lj0g3v0169309.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein RKD2-like [Glycine max] gi\|356519060\|ref\|XP_003528192.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10270 View details on PTHR10270 Search for proteins/transripts with this domain View external data on PTHR10270	50	275	226	5.00E-71	–
ProSiteProfiles	PS51519 View details on PS51519 Search for proteins/transripts with this domain View external data on PS51519	127	211	85	17.7	IPR003035 Show description in modal box View details on IPR003035 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02042 View details on PF02042 Search for proteins/transripts with this domain View external data on PF02042	143	190	48	2.30E-20	IPR003035 Show description in modal box View details on IPR003035 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	208	228	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0169309.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0169309.1, powered by CORGI.

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