Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0171479.1

Overview

Field	Value
Gene ID	Lj0g3v0171479
Transcript ID	Lj0g3v0171479.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: NAC domain-containing protein 100-like [Glycine max] gi\|356512034\|ref\|XP_003524726.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31744 View details on PTHR31744 Search for proteins/transripts with this domain View external data on PTHR31744	1	308	308	5.10E-161	–
PANTHER	PTHR31744:SF7 View details on PTHR31744:SF7 Search for proteins/transripts with this domain View external data on PTHR31744:SF7	1	308	308	5.10E-161	–
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	2	153	152	2.22E-61	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	3	153	151	58.522	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	4	128	125	1.40E-28	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj0g3v0171479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0171479.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.