Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0172049.1

Overview

Field Value
Gene ID Lj0g3v0172049
Transcript ID Lj0g3v0172049.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcium-binding allergen Ole e 8-like [Glycine max] gi|356524678|ref|XP_003530955.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10891
34 117 84 3.30E-34 –
ProSiteProfiles
PS50222
34 69 36 14.625
IPR002048
PANTHER
PTHR10891:SF608
34 117 84 3.30E-34 –
Gene3D
G3DSA:1.10.238.10
35 102 68 3.40E-22
IPR011992
SUPERFAMILY
SSF47473
36 117 82 3.59E-20
IPR011992
CDD
cd00051
38 98 61 2.88E-20
IPR002048
SMART
SM00054
38 66 29 1.40E-04
IPR002048
Pfam
PF13499
38 100 63 1.10E-15
IPR002048
ProSitePatterns
PS00018
47 59 13 –
IPR018247
ProSiteProfiles
PS50222
70 105 36 12.644
IPR002048
SMART
SM00054
74 102 29 9.30E-06
IPR002048
ProSitePatterns
PS00018
83 95 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0172049.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0172049.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.