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Lj0g3v0186729.1

Overview

Field Value
Gene ID Lj0g3v0186729
Transcript ID Lj0g3v0186729.1
Lotus japonicus genome version MG20 v3.0
Description f-box family protein [Populus trichocarpa] gi|224082450|ref|XP_002306697.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16517
1 423 423 2.20E-300 –
PANTHER
PTHR16517:SF31
1 423 423 2.20E-300 –
SUPERFAMILY
SSF81383
44 96 53 2.09E-06
IPR001810
Gene3D
G3DSA:1.20.1280.50
49 96 48 2.00E-06 –
Pfam
PF00646
52 102 51 6.90E-10
IPR001810
SUPERFAMILY
SSF54518
102 288 187 3.40E-90
IPR025659
Gene3D
G3DSA:3.20.90.10
112 284 173 1.40E-83
IPR000007
Pfam
PF01167
118 417 300 4.70E-84
IPR000007
PRINTS
PR01573
169 185 17 2.80E-66
IPR000007
PRINTS
PR01573
185 209 25 2.80E-66
IPR000007
PRINTS
PR01573
234 261 28 2.80E-66
IPR000007
Gene3D
G3DSA:3.20.90.10
317 417 101 1.40E-83
IPR000007
SUPERFAMILY
SSF54518
321 423 103 3.40E-90
IPR025659
PRINTS
PR01573
327 344 18 2.80E-66
IPR000007
PRINTS
PR01573
345 361 17 2.80E-66
IPR000007
ProSitePatterns
PS01200
345 358 14 –
IPR018066
PRINTS
PR01573
380 399 20 2.80E-66
IPR000007
PRINTS
PR01573
401 423 23 2.80E-66
IPR000007
ProSitePatterns
PS01201
408 423 16 –
IPR018066

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj0g3v0186729.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0186729.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.