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Lj0g3v0187709.1

Overview

Field Value
Gene ID Lj0g3v0187709
Transcript ID Lj0g3v0187709.1
Lotus japonicus genome version MG20 v3.0
Description 60S ribosomal protein L7 [Medicago truncatula] gi|357444611|ref|XP_003592583.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31920:SF16
1 189 189 1.40E-77 –
PANTHER
PTHR31920
1 189 189 1.40E-77 –
SUPERFAMILY
SSF101936
7 103 97 3.34E-20
IPR015300
Gene3D
G3DSA:2.40.330.10
10 103 94 4.20E-19
IPR015300
ProSiteProfiles
PS50863
10 103 94 12.323
IPR003340
CDD
cd10017
10 101 92 1.11E-13
IPR003340
Pfam
PF02362
11 102 92 4.80E-11
IPR003340
SMART
SM01019
11 103 93 1.40E-10
IPR003340
MobiDBLite
mobidb-lite
147 168 22 – –
PANTHER
PTHR31920
225 488 264 1.40E-77 –
PANTHER
PTHR31920:SF16
225 488 264 1.40E-77 –
Gene3D
G3DSA:2.40.330.10
233 323 91 7.10E-20
IPR015300
SUPERFAMILY
SSF101936
234 320 87 1.31E-17
IPR015300
CDD
cd10017
239 328 90 1.03E-17
IPR003340
ProSiteProfiles
PS50863
240 330 91 11.279
IPR003340
SMART
SM01019
241 330 90 3.50E-16
IPR003340
Pfam
PF02362
241 327 87 2.80E-14
IPR003340
Gene3D
G3DSA:2.40.330.10
387 489 103 8.30E-16
IPR015300
SUPERFAMILY
SSF101936
388 487 100 3.34E-14
IPR015300
CDD
cd10017
393 487 95 1.60E-13
IPR003340
SMART
SM01019
394 489 96 6.70E-06
IPR003340
Pfam
PF02362
412 487 76 9.40E-09
IPR003340
ProSiteProfiles
PS50863
436 489 54 10.433
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 28

Expression data

Expression pattern

Expression pattern of Lj0g3v0187709.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0187709.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.