Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0190909.1

Overview

Field	Value
Gene ID	Lj0g3v0190909
Transcript ID	Lj0g3v0190909.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: transcription factor TCP7-like [Glycine max] gi\|356536423\|ref\|XP_003536737.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP	SignalP-TM_GRAM_POSITIVE View details on SignalP-TM_GRAM_POSITIVE Search for proteins/transripts with this domain	1	35	35	–	–
PANTHER	PTHR31072 View details on PTHR31072 Search for proteins/transripts with this domain View external data on PTHR31072	7	211	205	1.60E-76	–
PANTHER	PTHR31072:SF7 View details on PTHR31072:SF7 Search for proteins/transripts with this domain View external data on PTHR31072:SF7	7	211	205	1.60E-76	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	28	53	26	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	74	113	40	–	–
Pfam	PF03634 View details on PF03634 Search for proteins/transripts with this domain View external data on PF03634	100	288	189	3.60E-34	IPR005333 Show description in modal box View details on IPR005333 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51369 View details on PS51369 Search for proteins/transripts with this domain View external data on PS51369	100	154	55	28.209	IPR017887 Show description in modal box View details on IPR017887 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	196	220	25	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0190909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0190909.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.