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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017887
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 49 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.036s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004489.1
n.a. PREDICTED: transcription factor TCP9-like [Cicer arietinum] gi|502157480|ref|XP_004510891.1| chr0 1640515 1641834 -
2 domain predictions
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Lj0g3v0040729.1
n.a. PREDICTED: transcription factor TCP14-like [Glycine max] gi|356562828|ref|XP_003549670.1| chr0 13307472 13309803 -
2 domain predictions
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Lj0g3v0128449.1
n.a. PlCYC3 [Pueraria montana var]. lobata] gi|21624279|dbj|BAC01126.1| chr0 58004878 58005831 -
2 domain predictions
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Lj0g3v0190909.1
n.a. PREDICTED: transcription factor TCP7-like [Glycine max] gi|356536423|ref|XP_003536737.1| chr0 93351700 93352908 +
2 domain predictions
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Lj1g3v0101540.1
n.a. CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| chr1 972434 973546 +
2 domain predictions
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Lj1g3v0559150.1
n.a. PREDICTED: transcription factor TCP5-like [Glycine max] gi|356507064|ref|XP_003522291.1| chr1 6753385 6755329 +
2 domain predictions
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Lj1g3v3024170.1
n.a. PREDICTED: transcription factor TCP13-like [Glycine max] gi|356568770|ref|XP_003552583.1| chr1 34624791 34626886 +
2 domain predictions
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Lj1g3v3116640.1
n.a. CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| chr1 35525137 35527213 -
2 domain predictions
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Lj1g3v3116640.2
n.a. CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| chr1 35525137 35527213 -
2 domain predictions
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Lj1g3v3847330.1
n.a. PREDICTED: transcription factor TCP20-like [Glycine max] gi|356571569|ref|XP_003553949.1| chr1 44260872 44262671 +
2 domain predictions
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Lj2g3v1091860.1
n.a. PREDICTED: transcription factor TCP13-like [Glycine max] gi|356523642|ref|XP_003530446.1| chr2 17699966 17705213 -
2 domain predictions
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Lj2g3v1293180.1
n.a. PREDICTED: transcription factor TCP14-like [Glycine max] gi|356502529|ref|XP_003520071.1| chr2 20691698 20694788 +
2 domain predictions
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Lj3g3v0428760.1
n.a. PREDICTED: transcription factor TCP4-like [Cicer arietinum] gi|502155347|ref|XP_004510040.1| chr3 4071845 4075181 +
2 domain predictions
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Lj3g3v2838560.1
n.a. PREDICTED: transcription factor TCP4-like [Glycine max] gi|356549866|ref|XP_003543311.1| chr3 34878384 34881379 -
2 domain predictions
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Lj4g3v1327800.1
n.a. PREDICTED: transcription factor TCP9-like [Glycine max] gi|356563230|ref|XP_003549867.1| chr4 19681224 19682947 -
2 domain predictions
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Lj4g3v1721910.1
n.a. PREDICTED: transcription factor TCP5-like [Glycine max] gi|356507064|ref|XP_003522291.1| chr4 24766671 24768830 +
2 domain predictions
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Lj4g3v1787030.1
n.a. CYC5 [Lotus japonicus] gi|78214558|gb|ABB36474.1| chr4 25292403 25294351 -
2 domain predictions
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Lj4g3v2468440.1
n.a. PREDICTED: transcription factor TCP2-like [Vitis vinifera] gi|225443918|ref|XP_002271548.1| chr4 33772774 33782323 -
2 domain predictions
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Lj5g3v0659440.1
n.a. PREDICTED: transcription factor TCP11-like [Cicer arietinum] gi|502121993|ref|XP_004497526.1| chr5 9186166 9189803 +
2 domain predictions
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Lj5g3v2029540.1
n.a. TCP family transcription factor [Medicago truncatula] gi|357444123|ref|XP_003592339.1| chr5 28708739 28710256 -
2 domain predictions
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Lj5g3v2045620.1
n.a. CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| chr5 29263939 29264783 -
2 domain predictions
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Lj6g3v1946420.1
n.a. PREDICTED: transcription factor TCP2-like [Glycine max] gi|356546508|ref|XP_003541668.1| chr6 22221608 22228834 -
2 domain predictions
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Lj6g3v2274940.1
n.a. TCP family transcription factor-like protein [Medicago truncatula] gi|357445371|ref|XP_003592963.1| chr6 26642747 26645222 +
2 domain predictions
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LotjaGi1g1v0212900.1
n.a. TCP family transcription factor; TAIR: AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5; Swiss-Prot: sp|Q9FME3|TCP5_ARATH Transcription factor TCP5; TrEMBL-Plants: tr|A0A151S0B6|A0A151S0B6_CAJCA Transcription factor TCP5; Found in the gene: LotjaGi1g1v0212900 LjG1.1_chr1 46885559 46887877 -
3 domain predictions
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LotjaGi1g1v0514300.1
n.a. TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|K7MUZ0|K7MUZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0514300 LjG1.1_chr1 103657034 103659404 +
3 domain predictions
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LotjaGi1g1v0525300.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK58|Q1WK58_LOTJA CYC1; Found in the gene: LotjaGi1g1v0525300 LjG1.1_chr1 105167967 105170597 -
3 domain predictions
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LotjaGi1g1v0627400.1
n.a. TCP family transcription factor family protein; TAIR: AT3G27010.1 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20; Swiss-Prot: sp|Q9LSD5|TCP20_ARATH Transcription factor TCP20; TrEMBL-Plants: tr|V7CWP0|V7CWP0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0627400 LjG1.1_chr1 117665788 117678609 +
3 domain predictions
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LotjaGi2g1v0055700.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK57|Q1WK57_LOTJA CYC2; Found in the gene: LotjaGi2g1v0055700 LjG1.1_chr2 11253760 11256583 +
3 domain predictions
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LotjaGi2g1v0266800.1
n.a. TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 LjG1.1_chr2 73652593 73655232 -
3 domain predictions
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LotjaGi2g1v0266800.2
n.a. TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 LjG1.1_chr2 73652593 73658425 -
3 domain predictions
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LotjaGi2g1v0266800.3
n.a. TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 LjG1.1_chr2 73652636 73658414 -
3 domain predictions
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LotjaGi2g1v0266800.4
n.a. TCP family transcription factor; TAIR: AT3G02150.2 plastid transcription factor 1; Swiss-Prot: sp|Q9S7W5|TCP13_ARATH Transcription factor TCP13; TrEMBL-Plants: tr|A0A151R2M5|A0A151R2M5_CAJCA Transcription factor TCP13; Found in the gene: LotjaGi2g1v0266800 LjG1.1_chr2 73652715 73658306 -
3 domain predictions
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LotjaGi2g1v0305700.1
n.a. TCP family transcription factor; TAIR: AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14; Swiss-Prot: sp|Q93Z00|TCP14_ARATH Transcription factor TCP14; TrEMBL-Plants: tr|V7CJV7|V7CJV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0305700 LjG1.1_chr2 77903669 77908916 +
3 domain predictions
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LotjaGi3g1v0043700.1
n.a. TCP family transcription factor TCP4; TAIR: AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3; Swiss-Prot: sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3; TrEMBL-Plants: tr|A0A072TRR1|A0A072TRR1_MEDTR TCP family transcription factor; Found in the gene: LotjaGi3g1v0043700 LjG1.1_chr3 4668370 4672102 +
3 domain predictions
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LotjaGi3g1v0449000.1
n.a. TCP family transcription factor TCP4; TAIR: AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3; Swiss-Prot: sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3; TrEMBL-Plants: tr|K7M2K4|K7M2K4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0449000 LjG1.1_chr3 86218398 86222071 -
3 domain predictions
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LotjaGi3g1v0469800_LC.1
n.a. TCP family transcription factor; TAIR: AT2G37000.1 TCP family transcription factor; Swiss-Prot: sp|Q9SJK7|TCP11_ARATH Transcription factor TCP11; TrEMBL-Plants: tr|A0A151R4T2|A0A151R4T2_CAJCA Transcription factor TCP21; Found in the gene: LotjaGi3g1v0469800_LC LjG1.1_chr3 88519607 88520385 +
2 domain predictions
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LotjaGi4g1v0218300.1
n.a. TCP family transcription factor, putative; TAIR: AT2G45680.1 TCP family transcription factor; Swiss-Prot: sp|O64647|TCP9_ARATH Transcription factor TCP9; TrEMBL-Plants: tr|I1MUS2|I1MUS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0218300 LjG1.1_chr4 51237472 51239131 -
3 domain predictions
 –
LotjaGi4g1v0248700.1
n.a. TCP family transcription factor; TAIR: AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14; Swiss-Prot: sp|Q93Z00|TCP14_ARATH Transcription factor TCP14; TrEMBL-Plants: tr|V7CAU9|V7CAU9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0248700 LjG1.1_chr4 60159912 60163111 +
3 domain predictions
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LotjaGi4g1v0255700.1
n.a. TCP family transcription factor; TAIR: AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5; Swiss-Prot: sp|Q9FME3|TCP5_ARATH Transcription factor TCP5; TrEMBL-Plants: tr|A0A1J7I3A7|A0A1J7I3A7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0255700 LjG1.1_chr4 60957732 60959981 +
3 domain predictions
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LotjaGi4g1v0263700.1
n.a. Cycloidea-like protein group 1A; TAIR: AT3G18550.2 TCP family transcription factor; Swiss-Prot: sp|Q93WI2|TB1_MAIZE Transcription factor TEOSINTE BRANCHED 1; TrEMBL-Plants: tr|Q1WK55|Q1WK55_LOTJA CYC5; Found in the gene: LotjaGi4g1v0263700 LjG1.1_chr4 62748943 62750932 -
3 domain predictions
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LotjaGi4g1v0360900.1
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A1J7H2B4|A0A1J7H2B4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360900 LjG1.1_chr4 73947790 73963488 -
3 domain predictions
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LotjaGi5g1v0305500.1
n.a. Transcription factor, putative; TAIR: AT5G51910.1 TCP family transcription factor; Swiss-Prot: sp|Q9LT89|TCP19_ARATH Transcription factor TCP19; TrEMBL-Plants: tr|A0A072VQN8|A0A072VQN8_MEDTR TCP family transcription factor; Found in the gene: LotjaGi5g1v0305500 LjG1.1_chr5 62375166 62376867 -
3 domain predictions
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LotjaGi5g1v0305500.2
n.a. Transcription factor, putative; TAIR: AT5G51910.1 TCP family transcription factor; Swiss-Prot: sp|Q9LT89|TCP19_ARATH Transcription factor TCP19; TrEMBL-Plants: tr|A0A072VQN8|A0A072VQN8_MEDTR TCP family transcription factor; Found in the gene: LotjaGi5g1v0305500 LjG1.1_chr5 62375252 62376890 -
3 domain predictions
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LotjaGi5g1v0311900.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK56|Q1WK56_LOTJA CYC3; Found in the gene: LotjaGi5g1v0311900 LjG1.1_chr5 62996406 63000098 -
3 domain predictions
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LotjaGi6g1v0311400.1
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62988228 62996497 -
3 domain predictions
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LotjaGi6g1v0311400.2
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62988902 62996468 -
3 domain predictions
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LotjaGi6g1v0311400.3
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62991181 62995439 -
3 domain predictions
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LotjaGi6g1v0363200.1
n.a. TCP family transcription factor; TAIR: AT1G58100.1 TCP family transcription factor; Swiss-Prot: sp|Q9C518|TCP8_ARATH Transcription factor TCP8; TrEMBL-Plants: tr|G7INN6|G7INN6_MEDTR TCP family transcription factor; Found in the gene: LotjaGi6g1v0363200 LjG1.1_chr6 67464495 67467877 +
3 domain predictions
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LotjaGi6g1v0363200.2
n.a. Transcription factor, putative; TAIR: AT1G58100.1 TCP family transcription factor; Swiss-Prot: sp|Q9C518|TCP8_ARATH Transcription factor TCP8; TrEMBL-Plants: tr|I1MJW9|I1MJW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0363200 LjG1.1_chr6 67465341 67466859 +
3 domain predictions
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