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Lj0g3v0192369.1

Overview

Field Value
Gene ID Lj0g3v0192369
Transcript ID Lj0g3v0192369.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable calcium-binding protein CML41-like [Cicer arietinum] gi|502153148|ref|XP_004509234.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 37 37 – –
MobiDBLite
mobidb-lite
16 39 24 – –
ProSiteProfiles
PS50222
49 84 36 13.593
IPR002048
SUPERFAMILY
SSF47473
51 197 147 6.52E-33
IPR011992
PANTHER
PTHR10891
53 199 147 1.40E-76 –
PANTHER
PTHR10891:SF568
53 199 147 1.40E-76 –
SMART
SM00054
53 81 29 2.10E-04
IPR002048
Gene3D
G3DSA:1.10.238.10
54 119 66 1.60E-19
IPR011992
Pfam
PF13499
54 115 62 2.50E-12
IPR002048
CDD
cd00051
54 115 62 8.34E-16
IPR002048
ProSitePatterns
PS00018
62 74 13 –
IPR018247
ProSiteProfiles
PS50222
85 120 36 11.919
IPR002048
SMART
SM00054
89 117 29 0.032
IPR002048
ProSitePatterns
PS00018
98 110 13 –
IPR018247
Gene3D
G3DSA:1.10.238.10
125 197 73 1.70E-14
IPR011992
Pfam
PF13833
148 198 51 1.50E-11
IPR002048
ProSiteProfiles
PS50222
167 199 33 12.17
IPR002048
SMART
SM00054
171 199 29 0.001
IPR002048
ProSitePatterns
PS00018
180 192 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0192369.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0192369.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.