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Lj0g3v0200579.1

Overview

Field	Value
Gene ID	Lj0g3v0200579
Transcript ID	Lj0g3v0200579.1
Lotus japonicus genome version	MG20 v3.0
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao] gi\|508703951\|gb\|EOX95847.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	27	27	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	26	48	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	28	47	20	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	48	491	444	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	80	107	28	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	134	162	29	–	–
PANTHER	PTHR10108 View details on PTHR10108 Search for proteins/transripts with this domain View external data on PTHR10108	202	482	281	3.60E-166	–
PANTHER	PTHR10108:SF882 View details on PTHR10108:SF882 Search for proteins/transripts with this domain View external data on PTHR10108:SF882	202	482	281	3.60E-166	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	313	466	154	3.98E-09	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03141 View details on PF03141 Search for proteins/transripts with this domain View external data on PF03141	332	438	107	4.40E-06	IPR004159 Show description in modal box View details on IPR004159 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0200579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0200579.1, powered by CORGI.

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