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Lj0g3v0201339.1

Overview

Field Value
Gene ID Lj0g3v0201339
Transcript ID Lj0g3v0201339.1
Lotus japonicus genome version MG20 v3.0
Description Proline-rich protein [Medicago truncatula] gi|357477499|ref|XP_003609035.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PRINTS
PR01217
3 24 22 2.40E-10 –
PANTHER
PTHR31731
7 35 29 6.60E-56 –
PRINTS
PR01217
25 41 17 2.40E-10 –
CDD
cd01958
35 118 84 2.84E-30
IPR027923
Gene3D
G3DSA:1.10.110.10
35 119 85 1.30E-32 –
Pfam
PF14547
37 119 83 1.90E-30
IPR027923
SMART
SM00499
37 118 82 1.60E-08
IPR016140
SUPERFAMILY
SSF47699
39 119 81 1.17E-24
IPR016140
PRINTS
PR01217
130 155 26 2.40E-10 –
PANTHER
PTHR31731
132 239 108 6.60E-56 –
CDD
cd01958
155 238 84 3.69E-30
IPR027923
Gene3D
G3DSA:1.10.110.10
155 238 84 9.10E-33 –
SMART
SM00499
157 238 82 6.30E-09
IPR016140
Pfam
PF14547
157 239 83 9.10E-31
IPR027923
SUPERFAMILY
SSF47699
159 238 80 9.45E-25
IPR016140

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0201339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0201339.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.